Pre_GI: BLASTN Hits

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Query: NC_009664:1195630 Kineococcus radiotolerans SRS30216, complete genome

Start: 1195630, End: 1226374, Length: 30745

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008268:6149576*6149576617684227267Rhodococcus sp. RHA1, complete genome1e-33153BLASTN svgBLASTP svg
NC_004369:1051013*1051013107385922847Corynebacterium efficiens YS-314, complete genome3e-31145BLASTN svgBLASTP svg
NC_009664:32452103245210326681721608Kineococcus radiotolerans SRS30216, complete genome8e-29137BLASTN svgBLASTP svg
NC_014550:88950088950091578326284Arthrobacter arilaitensis Re117, complete genome2e-26129BLASTN svgBLASTP svg
NC_018750:79136007913600793264719048Streptomyces venezuelae ATCC 10712, complete genome1e-18103BLASTN svgBLASTP svg
NC_002945:18562281856228188073824511Mycobacterium bovis AF2122/97, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008769:18761091876109190061624508Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_009525:18723601872360189686024501Mycobacterium tuberculosis H37Ra, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_009565:18662141866214189074224529Mycobacterium tuberculosis F11, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012704:652589*65258967634423756Corynebacterium kroppenstedtii DSM 44385, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_015848:18966601896660192209125432Mycobacterium canettii CIPT 140010059, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_019950:18708631870863189629425432Mycobacterium canettii CIPT 140060008 complete genome2e-1799.6BLASTN svgBLASTP svg
NC_000962:18708421870842189534224501Mycobacterium tuberculosis H37Rv, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_009480:25804292580429261873938311Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete1e-1593.7BLASTN svgBLASTP svg
NC_007777:45973794597379462670829330Frankia sp. CcI3, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013947:1363078*1363078138138918312Stackebrandtia nassauensis DSM 44728 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012815:1757992*1757992178040722416Bifidobacterium animalis subsp. lactis DSM 10140, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012814:1757753*1757753178063522883Bifidobacterium animalis subsp. lactis Bl-04, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_013093:125363*12536314809922737Actinosynnema mirum DSM 43827, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011145:4628000*4628000465886330864Anaeromyxobacter sp. K, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_013714:13765001376500141614039641Bifidobacterium dentium Bd1, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_013757:1544348*1544348158219937852Geodermatophilus obscurus DSM 43160, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_018750:3249756*3249756327318823433Streptomyces venezuelae ATCC 10712, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015573:162000*16200018459922600Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014100:1144463*1144463117100626544Caulobacter segnis ATCC 21756 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013093:45804484580448460069420247Actinosynnema mirum DSM 43827, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012522:4299287*4299287434520345917Rhodococcus opacus B4, complete genome4e-0661.9BLASTN svgBLASTP svg