Pre_GI: BLASTN Hits

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Query: NC_008271:248371 Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence

Start: 248371, End: 272099, Length: 23729

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008268:75763657576365760084724483Rhodococcus sp. RHA1, complete genome02831BLASTN svgBLASTP svg
NC_008268:34180003418000344059922600Rhodococcus sp. RHA1, complete genome6e-140505BLASTN svgBLASTP svg
NC_008726:49476949476951509920331Mycobacterium vanbaalenii PYR-1, complete genome3e-71278BLASTN svgBLASTP svg
NC_013235:13544431354443137485420412Nakamurella multipartita DSM 44233, complete genome6e-63250BLASTN svgBLASTP svg
NC_014814:13240413240415486122458Mycobacterium sp. Spyr1 chromosome, complete genome1e-57232BLASTN svgBLASTP svg
NC_013235:40455894045589406814822560Nakamurella multipartita DSM 44233, complete genome8e-53216BLASTN svgBLASTP svg
NC_013235:2257899*2257899229859940701Nakamurella multipartita DSM 44233, complete genome1e-45192BLASTN svgBLASTP svg
NC_000962:34740003474000349418120182Mycobacterium tuberculosis H37Rv, complete genome2e-32149BLASTN svgBLASTP svg
NC_002755:34655823465582349023924658Mycobacterium tuberculosis CDC1551, complete genome2e-32149BLASTN svgBLASTP svg
NC_002945:34293153429315345013820824Mycobacterium bovis AF2122/97, complete genome2e-32149BLASTN svgBLASTP svg
NC_008769:34272543427254344807620823Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome2e-32149BLASTN svgBLASTP svg
NC_009525:34849243484924350559920676Mycobacterium tuberculosis H37Ra, complete genome2e-32149BLASTN svgBLASTP svg
NC_009565:34857723485772350477419003Mycobacterium tuberculosis F11, complete genome2e-32149BLASTN svgBLASTP svg
NC_012207:34211443421144344072619583Mycobacterium bovis BCG str. Tokyo 172, complete genome2e-32149BLASTN svgBLASTP svg
NC_008269:66722866722869209924872Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence1e-30143BLASTN svgBLASTP svg
NC_013131:997692999769291000446227534Catenulispora acidiphila DSM 44928, complete genome1e-26129BLASTN svgBLASTP svg
NC_012803:2195808*2195808224976153954Micrococcus luteus NCTC 2665, complete genome6e-26127BLASTN svgBLASTP svg
NC_015312:1191633*1191633121600524373Pseudonocardia dioxanivorans CB1190 chromosome, complete genome9e-22113BLASTN svgBLASTP svg
NC_012803:13022611302261132380421544Micrococcus luteus NCTC 2665, complete genome3e-18101BLASTN svgBLASTP svg
NC_012803:17531381753138177628023143Micrococcus luteus NCTC 2665, complete genome3e-18101BLASTN svgBLASTP svg
NC_012803:3691*36914264438954Micrococcus luteus NCTC 2665, complete genome3e-18101BLASTN svgBLASTP svg
NC_012803:361127*36112738262921503Micrococcus luteus NCTC 2665, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_004369:531579*53157956209930521Corynebacterium efficiens YS-314, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015859:3177199*3177199321545938261Corynebacterium variabile DSM 44702 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013729:863743*86374390229738555Kribbella flavida DSM 17836, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009921:3551036*3551036362235971324Frankia sp. EAN1pec, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009921:3384116*3384116340895324838Frankia sp. EAN1pec, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009921:1645380*1645380166750622127Frankia sp. EAN1pec, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014391:1812500*1812500186094748448Micromonospora aurantiaca ATCC 27029 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014391:4672105*4672105470459932495Micromonospora aurantiaca ATCC 27029 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014815:658893*65889368838329491Micromonospora sp. L5 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013235:42256542256544109918535Nakamurella multipartita DSM 44233, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008268:71806637180663722188141219Rhodococcus sp. RHA1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015859:33464733346473337186825396Corynebacterium variabile DSM 44702 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015859:31265003126500314878722288Corynebacterium variabile DSM 44702 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015859:15364391536439156796931531Corynebacterium variabile DSM 44702 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg