Query: NC_004307:579729 Bifidobacterium longum NCC2705, complete genome
Start: 579729, End: 609143, Length: 29415
Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria
General Information: This strain was isolated from infant feces. Normal human gut flora. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010816:621849 | 621849 | 645048 | 23200 | Bifidobacterium longum DJO10A, complete genome | 0 | 8288 | BLASTN svg | BLASTP svg |
NC_015052:1094825 | 1094825 | 1120731 | 25907 | Bifidobacterium longum subsp. infantis 157F, complete genome | 0 | 8153 | BLASTN svg | BLASTP svg |
NC_015067:998500 | 998500 | 1020627 | 22128 | Bifidobacterium longum subsp. longum JCM 1217, complete genome | 0 | 4666 | BLASTN svg | BLASTP svg |
NC_009089:3889811 | 3889811 | 3921485 | 31675 | Clostridium difficile 630, complete genome | 3e-31 | 145 | BLASTN svg | BLASTP svg |
NC_019892:1113114* | 1113114 | 1137508 | 24395 | Singulisphaera acidiphila DSM 18658 chromosome, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_011901:625712 | 625712 | 665313 | 39602 | Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_008463:3503576* | 3503576 | 3527735 | 24160 | Pseudomonas aeruginosa UCBPP-PA14, complete genome | 4e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_011770:3735162* | 3735162 | 3763836 | 28675 | Pseudomonas aeruginosa LESB58, complete genome | 4e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_013714:1521404* | 1521404 | 1546427 | 25024 | Bifidobacterium dentium Bd1, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_009089:3935500* | 3935500 | 3979165 | 43666 | Clostridium difficile 630, complete genome | 6e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_007974:1007834 | 1007834 | 1030359 | 22526 | Ralstonia metallidurans CH34 chromosome 2, complete sequence | 9e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_012912:4428111 | 4428111 | 4456832 | 28722 | Dickeya zeae Ech1591, complete genome | 4e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_009921:4186000 | 4186000 | 4206112 | 20113 | Frankia sp. EAN1pec, complete genome | 6e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015067:32500 | 32500 | 57099 | 24600 | Bifidobacterium longum subsp. longum JCM 1217, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014394:942015 | 942015 | 966637 | 24623 | Gallionella capsiferriformans ES-2 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |