Pre_GI: BLASTP Hits

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Query: NC_017362:1512959:1516175 Helicobacter pylori Lithuania75 chromosome, complete genome

Start: 1516175, End: 1516576, Length: 402

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015578:3495034:3501621350162135027361116Treponema primitia ZAS-2 chromosome, complete genometype I restriction-modification system S subunit8e-25112
NC_006510:372826:3786463786463796861041Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system S subunit6e-2199.4
NC_006510:1400000:1406089140608914072641176Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system specificity protein1e-2098.2
NC_014727:995480:1006396100639610075681173Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,type-i specificity determinant subunit5e-1786.3
NC_008322:2077628:2102612210261221039581347Shewanella sp. MR-7, complete genomerestriction modification system DNA specificity domain7e-1269.3
NC_011498:448000:4480024480024491831182Helicobacter pylori P12, complete genometype I R-M system S protein1e-1168.2
NC_011601:4856717:4865866486586648670921227Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometype I restriction-modification enzyme S subunit2e-1168.2
NC_014370:885937:9180299180299193151287Prevotella melaninogenica ATCC 25845 chromosome chromosome I,type I restriction modification DNA specificity domain protein4e-1167
NC_008942:815280:8215758215758229151341Methanocorpusculum labreanum Z, complete genomehypothetical protein4e-0960.1
NC_009634:299327:3072993072993085221224Methanococcus vannielii SB chromosome, complete genomerestriction modification system DNA specificity subunit4e-0960.1
NC_017371:1470582:147328614732861473843558Helicobacter pylori Gambia94/24 chromosome, complete genometype I R-M system specificity subunit5e-0959.7
NC_017378:1518529:1518529151852915196801152Helicobacter pylori Puno120 chromosome, complete genomerestriction modification system DNA specificity subunit5e-0856.2
NC_010939:321492:3299713299713311371167Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeputative Type I restriction enzyme EcoR124II specificity protein1e-0652
NC_010831:173499:1827671827671850942328Chlorobium phaeobacteroides BS1, complete genomeN-6 DNA methylase1e-0651.6
NC_011295:1263500:1267893126789312699292037Coprothermobacter proteolyticus DSM 5265, complete genometype I restriction/modification enzyme5e-0649.7
NC_013949:939695:9490009490009502861287Helicobacter mustelae 12198 chromosome, complete genometype I restriction-modification system S protein5e-0649.7