Pre_GI: BLASTP Hits

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Query: NC_017328:2225418:2245057 Shigella flexneri 2002017 chromosome, complete genome

Start: 2245057, End: 2245674, Length: 618

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002185:2347413:2365067236506723688613795Escherichia coli W, complete genome6e-104376
NC_011741:2239637:2256015225601522598093795Escherichia coli IAI1 chromosome, complete genomeputative Molybdate metabolism regulator (molR)6e-104376
CU928160:2239637:2256015225601522598093795Escherichia coli IAI1 chromosome, complete genomeputative Molybdate metabolism regulator (molR)6e-104376
NC_016822:2341127:235824923582492359070822Shigella sonnei 53G, complete genomehypothetical protein1e-103375
NC_007384:2251792:226888022688802269701822Shigella sonnei Ss046, complete genomemolybdate metabolism regulator, first fragment1e-103375
NC_010468:1694729:1694729169472916985233795Escherichia coli ATCC 8739, complete genomeWGR domain protein2e-103374
NC_009800:2225182:2238823223882322426173795Escherichia coli HS, complete genomemolybdate metabolism regulator2e-103374
NC_000913:2180855:219449621944962195320825Escherichia coli K12, complete genome6e-103373
NC_011745:2399313:2415694241569424194823789Escherichia coli ED1a chromosome, complete genomeputative Molybdate metabolism regulator (molR)1e-101368
NC_011750:955451:955451955451956011561Escherichia coli IAI39 chromosome, complete genomehypothetical protein9e-47186
NC_011750:955451:9522129522129554813270Escherichia coli IAI39 chromosome, complete genome7e-23107
NC_009800:2225182:2242627224262722462593633Escherichia coli HS, complete genomemolybdate metabolism regulator MolR homolog4e-1167.8
NC_012759:2069326:2090784209078420944163633Escherichia coli BW2952 chromosome, complete genomehypothetical protein5e-1167.8
AC_000091:2185369:2203613220361322072453633Escherichia coli W3110 DNA, complete genomehypothetical protein5e-1167.8
NC_000913:2180855:2198301219830122019333633Escherichia coli K12, complete genomehypothetical protein5e-1167.8
NC_010473:2267851:2289309228930922929413633Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein5e-1167.8
NC_011741:2239637:2259819225981922634513633Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-1065.5
CU928160:2239637:2259819225981922634513633Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-1065.5
CP002185:2347413:2368871236887123725033633Escherichia coli W, complete genomemolybdate metabolism regulator MolR-like protein3e-1065.1
NC_011745:2399313:2419492241949224231243633Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-0859.3