Pre_GI: BLASTP Hits

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Query: NC_017319:155958:161915 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 161915, End: 162817, Length: 903

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004851:157675:163184163184164155972Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein4e-167587
NC_006856:95830:9929899298100269972Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-161568
NC_009787:17344:190811908120007927Escherichia coli E24377A plasmid pETEC_35, complete sequencehypothetical protein3e-151534
NC_002128:35000:380753807538977903Escherichia coli O157:H7 str. Sakai plasmid pO157, completehypothetical protein7e-148523
NC_007414:56508:606506065061552903Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein7e-148523
NC_014842:19411:477094770948668960Pantoea sp. At-9b plasmid pPAT9B05, complete sequencehypothetical protein1e-68259
NC_012962:3864000:3867825386782538688651041Photorhabdus asymbiotica, complete genomeHypothetical protein yfaB5e-35148
NC_012779:346998:366569366569367504936Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-34145
NC_010554:2789722:2797323279732327983241002Proteus mirabilis HI4320, complete genomeplasmid-related protein4e-34145
NC_014029:331919:391532391532392455924Yersinia pestis Z176003 chromosome, complete genomehypothetical protein8e-34144
NC_011745:3443371:345761934576193458599981Escherichia coli ED1a chromosome, complete genomehypothetical protein4e-33142
NC_009832:4564752:457748645774864578409924Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12813e-33142
NC_014304:77715:780237802378961939Erwinia billingiae Eb661 plasmid pEB102, complete sequenceconserved uncharacterized protein4e-33141
NC_009832:4482500:449663544966354497576942Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12816e-33141
NC_009832:426993:444600444600445523924Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12812e-32139
NC_013892:1503162:151878915187891519712924Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein4e-32139
NC_010102:4557037:457016845701684571121954Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-32137
NC_016816:4129299:417266241726624173606945Pantoea ananatis LMG 5342, complete genomehypothetical protein4e-30132
NC_014121:489500:511208511208512158951Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-28126
NC_012214:537000:553141553141554082942Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-28126
NC_012214:3303955:330477633047763305717942Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-28126
NC_009801:3374501:339092633909263391753828Escherichia coli E24377A, complete genometransposition helper protein, IS21 family3e-0755.8