Pre_GI: BLASTP Hits

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Query: NC_017319:155958:155958 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 155958, End: 156362, Length: 405

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011745:333061:3383153383153395471233Escherichia coli ED1a chromosome, complete genomeputative reverse transcriptase7e-68255
NC_010660:33109:3388333883351001218Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencereverse transcriptase3e-67253
NC_009788:16360:272902729028060771Escherichia coli E24377A plasmid pETEC_73, complete sequencehypothetical protein4e-65246
NC_009142:2480608:250647125064712507448978Saccharopolyspora erythraea NRRL 2338, complete genomeRNA-directed DNA polymerase4e-1683.2
NC_011983:1746000:1749627174962717508861260Agrobacterium radiobacter K84 chromosome 2, complete genomereverse transcriptase/maturase protein1e-1582
NC_007777:3000941:301688930168893017440552Frankia sp. CcI3, complete genomereverse transcriptase5e-1579.7
NC_017249:7993713:8065217806521780664611245Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-1477.4
NC_004463:2158116:2213052221305222142961245Bradyrhizobium japonicum USDA 110, complete genomeprobable maturase; reverse transcriptase2e-1477.4
NC_011060:1288862:1305353130535313065941242Pelodictyon phaeoclathratiforme BU-1, complete genomeRNA-directed DNA polymerase3e-1477
NC_014972:1982315:1989808198980819914241617Desulfobulbus propionicus DSM 2032 chromosome, complete genome6e-1476.3
NC_013792:33893:5021050210514541245Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequenceRNA-directed DNA polymerase (Reverse transcriptase)1e-1375.5
NC_003552:3479000:3490274349027434915211248Methanosarcina acetivorans C2A, complete genomereverse transcriptase9e-1475.5
NC_021171:4367834:4374012437401243752561245Bacillus sp. 1NLA3E, complete genomeRNA-directed DNA polymerase9e-1475.5
NC_019697:1879769:1893778189377818951931416Chamaesiphon minutus PCC 6605, complete genomeRetron-type reverse transcriptase1e-1375.1
NC_017904:2379387:240463224046322404979348Mycobacterium sp. MOTT36Y chromosome, complete genomeRNA-directed DNA polymerase5e-1373.2
NC_015733:3736104:3764353376435337656061254Pseudomonas putida S16 chromosome, complete genomereverse transcriptase9e-1372.4
NC_017986:331610:3373573373573386101254Pseudomonas putida ND6 chromosome, complete genomereverse transcriptase9e-1372.4
NC_011059:2272747:2285752228575222869931242Prosthecochloris aestuarii DSM 271, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)8e-1372.4
NC_010995:3745957:3788975378897537901831209Cellvibrio japonicus Ueda107, complete genomeputative maturase1e-1272
NC_005126:1265071:1274750127475012761591410Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1271.6
NC_015656:1947810:1961959196195919632241266Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase2e-1271.2
NC_008576:1413778:1414112141411214151641053Magnetococcus sp. MC-1, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)2e-1270.9
NC_008576:777949:7862527862527875051254Magnetococcus sp. MC-1, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)2e-1270.9
NC_015656:132633:1452901452901465671278Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase3e-1167.4
NC_015656:2900730:2910652291065229119291278Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase3e-1167.4
NC_015656:2484749:2495512249551224967891278Frankia symbiont of Datisca glomerata chromosome, complete genomeRNA-directed DNA polymerase3e-1167.4
NC_011059:670345:6709046709046721391236Prosthecochloris aestuarii DSM 271, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-1166.6
NC_013223:724394:7518867518867532111326Desulfohalobium retbaense DSM 5692, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-1065.1
NC_015914:4248000:4265401426540142666631263Cyclobacterium marinum DSM 745 chromosome, complete genomeRNA-directed DNA polymerase2e-1064.7
NC_015914:4248000:4259490425949042607521263Cyclobacterium marinum DSM 745 chromosome, complete genomeRNA-directed DNA polymerase2e-1064.7
NC_003078:671000:6755736755736768321260Sinorhizobium meliloti 1021 plasmid pSymB, complete sequenceputative reverse transcriptasematurase protein2e-1064.7
NC_011751:256830:2698272698272710771251Escherichia coli UMN026 chromosome, complete genomeputative reverse transcriptase6e-1062.8
NC_015733:864959:8899838899838912151233Pseudomonas putida S16 chromosome, complete genomereverse transcriptase1e-0962
NC_014934:3751612:3771375377137537726281254Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)2e-0960.8
NC_014934:244587:2514522514522527051254Cellulophaga algicola DSM 14237 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)2e-0960.8
NC_009921:4035225:4042777404277740440301254Frankia sp. EAN1pec, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-0858.5
NC_014228:1712339:1738743173874317400771335Xenorhabdus nematophila ATCC 19061, complete genomePutative reverse transcriptase1e-0858.2
NC_009921:2565640:257630625763062576710405Frankia sp. EAN1pec, complete genomereverse transcriptase2e-0858.2
NC_016584:593954:605686605686606261576Desulfosporosinus orientis DSM 765 chromosome, complete genome5e-0856.6
NC_014655:2092365:2098774209877421000061233Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA-directed DNA polymerase (reverse transcriptase)9e-0855.5
NC_014655:2092365:2096909209690920981411233Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA-directed DNA polymerase9e-0855.5
NC_021182:4829000:4843338484333848445821245Clostridium pasteurianum BC1, complete genomeRetron-type reverse transcriptase1e-0755.1
NC_014228:4360676:437436643743664375328963Xenorhabdus nematophila ATCC 19061, complete genomeputative Reverse transcriptase3e-0753.9
NC_014228:1712339:174042317404231740782360Xenorhabdus nematophila ATCC 19061, complete genomeRNA-directed DNA polymerase (Reverse transcriptase) (fragment)4e-0753.5
NC_006513:2526843:254699225469922547891900Azoarcus sp. EbN1, complete genomereverse transcriptase/retron type, probably fragment3e-0650.8