Pre_GI: BLASTP Hits

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Query: NC_017265:2306500:2321272 Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,

Start: 2321272, End: 2321541, Length: 270

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:3535786:354532035453203545544225Yersinia pestis A1122 chromosome, complete genomephage integrase family site specific recombinase3e-37153
NC_010159:2128157:214251321425132142737225Yersinia pestis Angola, complete genome3e-37153
NC_010634:2124185:213599021359902136214225Yersinia pseudotuberculosis PB1/+, complete genomephage integrase family site specific recombinase9e-37152
NC_009708:2537557:2555953255595325569691017Yersinia pseudotuberculosis IP 31758 chromosome, complete genomephage integrase family site specific recombinase2e-28124
NC_007712:1954808:1974024197402419750401017Sodalis glossinidius str. 'morsitans', complete genomephage integrase4e-22103
NC_006155:2116834:2128303212830321293251023Yersinia pseudotuberculosis IP 32953, complete genomeputative integrase3e-21100
NC_012779:2127542:2148941214894121499511011Edwardsiella ictaluri 93-146, complete genomesite-specific recombinase, phage integrase family2e-2097.4
NC_014837:1570500:157833915783391578668330Pantoea sp. At-9b chromosome, complete genome9e-2095.5
NC_016816:2953530:2977372297737229783941023Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family1e-1891.7
CP002797:4812799:4826760482676048278061047Escherichia coli NA114, complete genomePutative integrase5e-1579.7
NC_011294:2053991:205795920579592058948990Salmonella enterica subsp. enterica serovar Enteritidis strphage integrase9e-1062.4
NC_011205:2180598:218594621859462186935990Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase protein9e-1062.4
NC_020181:2097066:2117522211752221185741053Enterobacter aerogenes EA1509E, complete genomePutative integrase1e-0962
NC_007712:2028500:2057823205782320588451023Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase8e-0959.3
NC_013716:1138441:115119811511981151500303Citrobacter rodentium ICC168, complete genome1e-0858.9
NC_010067:892729:914941914941915159219Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0857