Pre_GI: BLASTP Hits

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Query: NC_017179:805867:834689 Clostridium difficile BI1, complete genome

Start: 834689, End: 835468, Length: 780

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:796313:825135825135825914780Clostridium difficile CD196 chromosome, complete genomehistidinol-phosphatase2e-138491
NC_009089:873295:899092899092899871780Clostridium difficile 630, complete genomeputative histidinol phosphatase5e-138490
NC_008262:904000:9126639126639145371875Clostridium perfringens SM101, complete genomesensory box protein/histidinol phosphate phosphatase family protein5e-70264
NC_003366:981105:9859459859459878191875Clostridium perfringens str. 13, complete genomehistidinol-phosphatase1e-69263
NC_009725:2784334:278433427843342785146813Bacillus amyloliquefaciens FZB42, complete genomeHisJ1e-58226
NC_009328:2808897:281078728107872811611825Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehistidinol-phosphatase1e-57223
CP002207:2452286:245228624522862453095810Bacillus atrophaeus 1942, complete genomehistidinol-phosphatase4e-56218
NC_014639:2452286:245228624522862453095810Bacillus atrophaeus 1942 chromosome, complete genomehistidinol-phosphatase4e-56218
UCMB5137:2418403:241759724175972418406810Bacillus atrophaeus UCMB-5137histidinol-phosphatase2e-56218
NC_010556:2328303:233108223310822331876795Exiguobacterium sibiricum 255-15, complete genomehistidinol phosphate phosphatase HisJ family4e-53207
NC_018665:2163713:216927821692782170072795Exiguobacterium antarcticum B7 chromosome, complete genomeHistidinol phosphate phosphatase HisJ family5e-52204
NC_014364:394899:464885464885465736852Spirochaeta smaragdinae DSM 11293 chromosome, complete genomehistidinol phosphate phosphatase HisJ family3e-1582.4
NC_014483:195321:204956204956205780825Paenibacillus polymyxa E681 chromosome, complete genomeProbable histidinol-phosphatase (HolPase)3e-1272.4
NC_015519:924000:936205936205937032828Tepidanaerobacter sp. Re1 chromosome, complete genomehistidinol phosphate phosphatase HisJ family3e-0755.8
NC_015555:2359000:236115823611582361976819Thermoanaerobacterium xylanolyticum LX-11 chromosome, completehistidinol phosphate phosphatase HisJ family3e-0755.8
NC_013921:2293411:230955823095582310376819Thermoanaerobacter italicus Ab9 chromosome, complete genomehistidinol phosphate phosphatase HisJ family1e-0653.9