Pre_GI: BLASTP Hits

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Query: NC_016944:859492:874029 Vibrio cholerae IEC224 chromosome I, complete sequence

Start: 874029, End: 877034, Length: 3006

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012668:2744393:2783790278379027868313042Vibrio cholerae MJ-1236 chromosome 1, complete sequenceToxR-activated gene A protein02011
NC_012578:818241:8344268344268374673042Vibrio cholerae M66-2 chromosome I, complete sequenceToxR-activated gene A protein02011
NC_002505:860789:8769748769748800153042Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeToxR-activated gene A protein02011
NC_012582:882931:8991168991169021573042Vibrio cholerae O395 chromosome chromosome I, complete sequenceToxR-activated gene A protein02008
NC_009457:351512:3676973676973707383042Vibrio cholerae O395 chromosome 2, complete sequenceToxR-activated gene A protein02008
NC_016445:338288:3560053560053575131509Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeToxR-activated A protein01040
NC_014366:1435785:1454008145400814574903483Gamma proteobacterium HdN1, complete genomesimilar to toxr-activated gene A protein, TagA2e-49198