Pre_GI: BLASTP Hits

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Query: NC_016944:168530:197140 Vibrio cholerae IEC224 chromosome I, complete sequence

Start: 197140, End: 197808, Length: 669

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016445:2593800:262239826223982623066669Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein1e-102372
NC_002505:168532:197130197130197798669Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein1e-102372
NC_015410:2505168:251246825124682513082615Pseudomonas mendocina NK-01 chromosome, complete genomelysine exporter protein LysE/YggA7e-27120
NC_009092:1684467:168446716844671685117651Shewanella loihica PV-4, complete genomeLysine exporter protein (LYSE/YGGA)4e-22104
NC_010170:1417615:143407414340741434691618Bordetella petrii, complete genomeputative amino acid efflux transmembrane protein1e-1376.6
NC_018678:2382708:238495023849502385576627Alteromonas macleodii str. 'English Channel 673' chromosome,lysine exporter protein LysE/YggA4e-1374.7
NC_008577:613958:625299625299625910612Shewanella sp. ANA-3 chromosome 1, complete sequenceLysine exporter protein (LYSE/YGGA)1e-1170.1
NC_018750:3249756:326965532696553270272618Streptomyces venezuelae ATCC 10712, complete genomeL-lysine permease2e-1168.9
NC_015434:2527412:255327525532752553871597Verrucosispora maris AB-18-032 chromosome, complete genomelysine exporter protein LysE/YggA8e-1167.4
NC_009707:36024:414794147942081603Campylobacter jejuni subsp. doylei 269.97 chromosome, completethreonine efflux protein9e-1063.9
NC_018868:4174794:417564341756434176308666Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomelysine exporter protein LysE/YggA4e-0961.6
NC_016582:5769080:578622457862245786847624Streptomyces bingchenggensis BCW-1 chromosome, complete genomeLysine exporter protein LysE1e-0860.1
NC_006138:2630338:263066726306672631317651Desulfotalea psychrophila LSv54, complete genomehypothetical protein5e-0858.2
NC_007498:1072112:108687910868791087496618Pelobacter carbinolicus DSM 2380, complete genomeputative threonine efflux protein5e-0857.8
NC_017186:9120711:912610891261089126722615Amycolatopsis mediterranei S699 chromosome, complete genomelysine exporter protein LysE/YggA1e-0756.6
NC_014318:9120651:912604891260489126662615Amycolatopsis mediterranei U32 chromosome, complete genomelysine exporter protein LysE/YggA1e-0756.6
NC_013850:3303500:332030333203033320941639Klebsiella variicola At-22 chromosome, complete genomeLysine exporter protein (LYSE/YGGA)4e-0754.7
NC_012660:2143376:218936921893692189986618Pseudomonas fluorescens SBW25 chromosome, complete genomeputative amino acid transporter-like protein2e-0652.8
NC_014915:3039639:304072030407203041346627Geobacillus sp. Y412MC52 chromosome, complete genomeLysine exporter protein (LYSE/YGGA)5e-0651.2
NC_011725:2206000:222062922206292221261633Bacillus cereus B4264 chromosome, complete genomehomoserine/threonine efflux protein6e-0651.2
NC_016613:1805907:182610618261061826753648Vibrio sp. EJY3 chromosome 1, complete sequenceHomoserine/homoserine lactone efflux protein6e-0651.2
NC_015711:8169752:820575582057558206390636Myxococcus fulvus HW-1 chromosome, complete genomehomoserine/threonine efflux protein7e-0650.8
NC_020210:2969862:297081429708142971440627Geobacillus sp. GHH01, complete genomelysine exporter protein9e-0650.4