Pre_GI: BLASTP Hits

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Query: NC_016822:4686971:4704600 Shigella sonnei 53G, complete genome

Start: 4704600, End: 4705466, Length: 867

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012967:4289929:430807443080744308952879Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-163574
NC_012947:4106031:410515641051564106034879Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-163574
CP002516:4431235:443036044303604431238879Escherichia coli KO11, complete genomehypothetical protein5e-163573
AC_000091:4313167:433403843340384334916879Escherichia coli W3110 DNA, complete genomehypothetical protein5e-163573
NC_010473:4409492:442774544277454428623879Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein5e-163573
NC_000913:4307471:432738343273834328261879Escherichia coli K12, complete genomehypothetical protein5e-163573
NC_010468:4305105:430423043042304305108879Escherichia coli ATCC 8739, complete genomehypothetical protein5e-163573
NC_012759:4247865:426611842661184266996879Escherichia coli BW2952 chromosome, complete genomehypothetical protein5e-163573
NC_016902:4431235:443036044303604431238879Escherichia coli KO11FL chromosome, complete genomehypothetical protein5e-163573
CU928145:4695932:471360947136094714487879Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein3e-162571
NC_011748:4695932:471360947136094714487879Escherichia coli 55989, complete genomehypothetical protein3e-162571
CU928160:4395156:441272344127234413601879Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-162571
NC_011741:4395156:441272344127234413601879Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-162571
NC_013364:5040268:506146550614655062343879Escherichia coli O111:H- str. 11128, complete genomehypothetical protein3e-162571
NC_013353:5022196:503994350399435040821879Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-162570
AP010958:5022196:503994350399435040821879Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein3e-162570
CP002185:4566150:458730145873014588179879Escherichia coli W, complete genomeconserved hypothetical protein3e-162570
NC_002695:5164819:518380951838095184687879Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-161567
NC_011353:5240020:525900952590095259887879Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-161567
NC_013008:5196080:521507052150705215948879Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-161567
NC_007384:4530000:454771745477174548550834Shigella sonnei Ss046, complete genomehypothetical protein2e-161567
NC_013941:5013695:503257550325755033453879Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-160565
NC_011751:4795928:481491648149164815794879Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-160565
NC_004431:4867648:488789648878964888774879Escherichia coli CFT073, complete genomeHypothetical protein yjcZ4e-160563
NC_011742:4569683:458993145899314590809879Escherichia coli S88 chromosome, complete genomehypothetical protein8e-160562
NC_011750:4719477:473708347370834737961879Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-159561
NC_010498:4656716:467431246743124675190879Escherichia coli SMS-3-5, complete genomehypothetical protein2e-159561
NC_008253:4541915:456146245614624562340879Escherichia coli 536, complete genomehypothetical protein YjcZ7e-158556
NC_009800:4332229:435341443534144354259846Escherichia coli HS, complete genomehypothetical protein1e-156552
NC_009801:4643000:466079346607934661638846Escherichia coli E24377A, complete genomehypothetical protein4e-156550
NC_011415:4582388:460017046001704601015846Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-155548
NC_008563:4656000:467543646754364676281846Escherichia coli APEC O1, complete genomehypothetical protein4e-153540
NC_007613:4156841:417887541788754179725851Shigella boydii Sb227, complete genome2e-67255
NC_012912:4167429:417430841743084175213906Dickeya zeae Ech1591, complete genomehypothetical protein3e-31135
NC_016822:3420826:343746234374623438367906Shigella sonnei 53G, complete genomehypothetical protein9e-31134
NC_009255:351695:357257357257358159903Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein1e-1273.6
NC_014366:1663034:167315216731521674048897Gamma proteobacterium HdN1, complete genomehypothetical protein1e-0860.5