Pre_GI: BLASTP Hits

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Query: NC_016822:3282654:3295650 Shigella sonnei 53G, complete genome

Start: 3295650, End: 3295730, Length: 81

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:903241:926017926017926157141Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-0754.3
NC_011415:3217796:322859432285943228734141Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-0754.3
CP002516:903241:926017926017926157141Escherichia coli KO11, complete genomehypothetical protein2e-0754.3
NC_009801:3175714:318651231865123186652141Escherichia coli E24377A, complete genomehypothetical protein2e-0754.3
NC_009800:2995958:300813930081393008279141Escherichia coli HS, complete genomehypothetical protein2e-0754.3
NC_011353:3805819:381661838166183816743126Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-0754.3
CP002185:3167738:31799193179919317999981Escherichia coli W, complete genomesmall stress response protein2e-0754.3