Pre_GI: BLASTP Hits

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Query: NC_016822:267758:269612 Shigella sonnei 53G, complete genome

Start: 269612, End: 270025, Length: 414

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:1110642:111064211106421111058417Salmonella enterica subsp. enterica serovar Agona str. SL483,type VI secretion system lysozyme-related protein7e-44175
NC_011745:258727:260574260574260999426Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-22104
NC_007946:258747:260594260594261019426Escherichia coli UTI89, complete genomehypothetical protein2e-22104
NC_008563:258725:260572260572260997426Escherichia coli APEC O1, complete genomehypothetical protein2e-22104
NC_011742:258746:260593260593261018426Escherichia coli S88 chromosome, complete genomehypothetical protein3e-22103
NC_008253:257059:259919259919260344426Escherichia coli 536, complete genomehypothetical protein1e-21102
NC_011751:256830:258677258677259102426Escherichia coli UMN026 chromosome, complete genomehypothetical protein8e-22102
NC_013592:1424560:144053714405371440968432Dickeya dadantii Ech586, complete genometype VI secretion system lysozyme-related protein4e-1786.7
NC_013421:1143500:115983711598371160268432Pectobacterium wasabiae WPP163, complete genometype VI secretion system lysozyme-related protein4e-1786.7
NC_005126:349658:398357398357398797441Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-1684.3
NC_009348:2631759:263352926335292633960432Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein6e-1682.8
NC_015968:4117835:415242541524254152853429Enterobacter asburiae LF7a chromosome, complete genometype VI secretion system lysozyme-like protein3e-1580.1
NC_008570:1986466:200073120007312001162432Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein8e-1579