Pre_GI: BLASTP Hits

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Query: NC_016822:246715:265407 Shigella sonnei 53G, complete genome

Start: 265407, End: 266687, Length: 1281

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002185:234719:2534052534052546851281Escherichia coli W, complete genomeForkhead-associated protein0875
NC_008253:257059:2557622557622571501389Escherichia coli 536, complete genomehypothetical protein3e-168591
NC_009792:4017510:402898940289894029948960Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-119427
NC_012962:293976:3139393139393152251287Photorhabdus asymbiotica, complete genomehypothetical protein5e-100364
NC_005126:349658:3942003942003954861287Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-97357
NC_013892:274297:2753552753552766501296Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-96353
NC_014228:4331327:4350220435022043515151296Xenorhabdus nematophila ATCC 19061, complete genomeConserved hypothetical protein with FHA domain (probable component of SST VI cluster)2e-95349
NC_008570:1986466:2003951200395120052011251Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein2e-67256
NC_013592:1424560:1443717144371714449311215Dickeya dadantii Ech586, complete genomeFHA domain containing protein1e-65250
NC_015968:4117835:4148413414841341496691257Enterobacter asburiae LF7a chromosome, complete genomeFHA domain-containing protein2e-58226
NC_013421:1143500:1163002116300211642221221Pectobacterium wasabiae WPP163, complete genomeFHA domain containing protein3e-56219
NC_007645:4423507:4447332444733244492181887Hahella chejuensis KCTC 2396, complete genomeuncharacterized conserved protein, contains FHA domain5e-1169.3
NC_009656:3733913:3733913373391337351151203Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-1067.8