Pre_GI: BLASTP Hits

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Query: NC_016822:1818897:1836281 Shigella sonnei 53G, complete genome

Start: 1836281, End: 1836976, Length: 696

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1737885:175829517582951758990696Shigella sonnei Ss046, complete genomecryptic nitrate reductase 2, delta subunit, assembly function1e-122438
NC_012759:1409086:142669714266971427392696Escherichia coli BW2952 chromosome, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)1e-121435
NC_000913:1517051:153463815346381535333696Escherichia coli K12, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)1e-121435
NC_010468:2406387:240638724063872407082696Escherichia coli ATCC 8739, complete genomenitrate reductase molybdenum cofactor assembly chaperone1e-121435
NC_010473:1607646:162523316252331625928696Escherichia coli str. K-12 substr. DH10B, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)1e-121435
AC_000091:1521976:153832815383281539023696Escherichia coli W3110 DNA, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)1e-121435
NC_002655:2015000:203192820319282032623696Escherichia coli O157:H7 EDL933, complete genomecryptic nitrate reductase 2, delta subunit, assembly function6e-121433
NC_013941:1857724:186031418603141861009696Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone 26e-121433
NC_010498:1700447:171668417166841717379696Escherichia coli SMS-3-5, complete genomenitrate reductase molybdenum cofactor assembly chaperone 21e-120432
NC_004431:1713141:173138217313821732077696Escherichia coli CFT073, complete genomeRespiratory nitrate reductase 2 delta chain1e-120432
NC_011751:1714131:173222817322281732923696Escherichia coli UMN026 chromosome, complete genomenitrate reductase 2 subunit delta (assembly subunit)1e-120432
NC_007606:1515403:151540315154031516098696Shigella dysenteriae Sd197, complete genomecryptic nitrate reductase 2, delta subunit, assembly function2e-118424
NC_011750:1809943:181159318115931812288696Escherichia coli IAI39 chromosome, complete genomenitrate reductase 2 (NRZ) subunit delta3e-118424
NC_011745:1581907:159852915985291599224696Escherichia coli ED1a chromosome, complete genomenitrate reductase 2 (NRZ) subunit delta3e-117420
NC_007946:1586656:160532816053281606023696Escherichia coli UTI89, complete genomecryptic nitrate reductase 2 delta subunit5e-116416
NC_008563:1577879:159424615942461594941696Escherichia coli APEC O1, complete genomecryptic nitrate reductase 2 delta subunit5e-116416
NC_011742:1528668:154733915473391548034696Escherichia coli S88 chromosome, complete genomenitrate reductase 2 (NRZ), delta subunit (assembly subunit)5e-116416
NC_015968:2583721:260437126043712605081711Enterobacter asburiae LF7a chromosome, complete genomenitrate reductase molybdenum cofactor assembly chaperone5e-52204
NC_013592:2059138:206446420644642065183720Dickeya dadantii Ech586, complete genomenitrate reductase molybdenum cofactor assembly chaperone2e-47189
NC_016614:1152500:116077411607741161496723Vibrio sp. EJY3 chromosome 2, complete sequencerespiratory nitrate reductase chaperone NarJ3e-47188
NC_014500:2688095:270489527048952705614720Dickeya dadantii 3937 chromosome, complete genomemolybdenum-cofactor-assembly chaperone subunit (subunit delta) of nitrate reductase 12e-45182
NC_014562:2563466:256274125627412563469729Pantoea vagans C9-1 chromosome, complete genomerespiratory nitrate reductase 1 delta chain2e-45182
NC_008321:2649781:266539326653932666103711Shewanella sp. MR-4, complete genomenitrate reductase molybdenum cofactor assembly chaperone5e-44177
NC_008322:2716676:273335527333552734065711Shewanella sp. MR-7, complete genomenitrate reductase molybdenum cofactor assembly chaperone5e-44177
NC_014532:2146466:216311021631102163889780Halomonas elongata DSM 2581, complete genomerepiratory nitrate reductase, subunit delta9e-32136
NC_002516:4321000:433596243359624336702741Pseudomonas aeruginosa PAO1, complete genomerespiratory nitrate reductase delta chain4e-30131
NC_008463:1188951:118895111889511189691741Pseudomonas aeruginosa UCBPP-PA14, complete genomerespiratory nitrate reductase delta chain4e-30131
NC_013166:1409790:143134014313401432071732Kangiella koreensis DSM 16069, complete genomenitrate reductase molybdenum cofactor assembly chaperone6e-27120
NC_016002:2825017:282435928243592825027669Pseudogulbenkiania sp. NH8B, complete genomerespiratory nitrate reductase subunit delta NarJ2e-1169.3