Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1454666 Shigella sonnei 53G, complete genome

Start: 1454666, End: 1456126, Length: 1461

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:3085000:3114079311407931160011923Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein0664
NC_009778:2227627:225881922588192259778960Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-57222
NC_004129:2201780:2220134222013422221852052Pseudomonas fluorescens Pf-5, complete genometerminase, large subunit1e-36154
NC_002947:3404000:3426049342604934280852037Pseudomonas putida KT2440, complete genometerminase, large subunit, putative2e-36154
NC_010322:1336231:1353981135398113560232043Pseudomonas putida GB-1 chromosome, complete genometerminase GpA3e-34146
NC_012724:3100430:3103231310323131053752145Burkholderia glumae BGR1 chromosome 1, complete genomePhage terminase large subunit (GpA)4e-34146
NC_016830:5031819:5034665503466550366772013Pseudomonas fluorescens F113 chromosome, complete genomePhage terminase, large subunit6e-34145
NC_017986:4091051:4108907410890741107931887Pseudomonas putida ND6 chromosome, complete genomephage terminase GpA1e-32141
NC_004578:3849835:3849835384983538518592025Pseudomonas syringae pv. tomato str. DC3000, complete genometerminase, large subunit9e-32138
NC_010508:1206498:1213005121300512149241920Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceterminase GpA2e-31137
NC_009659:3103601:3107482310748231094431962Janthinobacterium sp. Marseille chromosome, complete genomephage terminase, large subunit1e-30134
NC_007511:1147696:1168060116806011700571998Burkholderia sp. 383 chromosome 2, complete sequencePhage terminase GpA5e-30132
NC_016585:787498:7874987874987893631866Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencePutative phage terminase GpA2e-29130
NC_012416:753500:7784427784427802831842Wolbachia sp. wRi, complete genometerminase large subunit, putative4e-26119
NC_011420:36272:5246552465544712007Rhodospirillum centenum SW, complete genomephage terminase large subunit (GpA)1e-25117
NC_014632:1112733:1134686113468611364971812Ilyobacter polytropus DSM 2926 chromosome, complete genometerminase GpA1e-24114
NC_002978:234082:2505152505152523411827Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW1, terminase large subunit, putative2e-24113
NC_017243:1734179:1749339174933917512521914Brachyspira intermedia PWS/A chromosome, complete genomelarge terminase subunit4e-24112
NC_011958:976500:1010709101070910126671959Rhodobacter sphaeroides KD131 chromosome 2, complete genomeBacteriophage tail assembly protein7e-24112
NC_010981:1371265:1384424138442413862591836Wolbachia pipientis, complete genomePhage terminase large subunit GpA2e-22107
NC_010981:314745:3317733317733336081836Wolbachia pipientis, complete genomePhage terminase large subunit GpA2e-22107
NC_010981:242500:2582532582532600881836Wolbachia pipientis, complete genomePhage terminase large subunit GpA2e-22107
NC_012416:573202:5946765946765964991824Wolbachia sp. wRi, complete genomeputative phage terminase large subunit1e-21105
NC_002978:549454:5754605754605772831824Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW4, terminase large subunit, putative1e-21105
NC_012416:1079661:1101135110113511029581824Wolbachia sp. wRi, complete genomeputative phage terminase large subunit1e-21105
NC_007907:2534462:2536121253612125379651845Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-1893.2
NC_020126:2381380:2388233238823323900501818Myxococcus stipitatus DSM 14675, complete genomephage terminase, large subunit8e-1892
NC_009253:1265474:1279777127977712816211845Desulfotomaculum reducens MI-1 chromosome, complete genomephage terminase GpA9e-1892
NC_007954:3887488:3887488388748838893921905Shewanella denitrificans OS217, complete genomephage terminase GpA3e-1273.9
NC_009783:1956000:1975306197530619772131908Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein7e-1272.4
NC_014011:1139818:1150223115022311520881866Aminobacterium colombiense DSM 12261 chromosome, complete genometerminase GpA5e-1066.2
NC_015873:1193843:1227903122790312298131911Megasphaera elsdenii DSM 20460, complete genomephage terminase large subunit (GpA)1e-0965.1