Pre_GI: BLASTP Hits

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Query: NC_016582:9422650:9437373 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9437373, End: 9438140, Length: 768

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:1736854:175279917527991753617819Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein6e-89327
NC_010572:6463939:648304864830486483848801Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-84312
NC_015957:8103472:810785581078558108624770Streptomyces violaceusniger Tu 4113 chromosome, complete genome7e-72270
NC_013929:7606749:762671076267107627498789Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein6e-66250
NC_003155:7453994:747038574703857471197813Streptomyces avermitilis MA-4680, complete genomehypothetical protein8e-62236
NC_016114:5539021:555707055570705557858789Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein3e-60231
NC_013510:3324978:333657133365713337347777Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-53209
NC_018524:4049990:406496040649604065766807Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein3e-49194
NC_018524:4049990:406580640658064066597792Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein1e-46186
NC_014210:3763940:377937837793783780163786Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein2e-46185
NC_015953:1581542:159952115995211599841321Streptomyces sp. SirexAA-E chromosome, complete genome2e-31135