Pre_GI: BLASTP Hits

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Query: NC_016582:11734963:11750413 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11750413, End: 11750997, Length: 585

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015434:666692:702511702511703194684Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator1e-1169.3
NC_009921:1813500:184397718439771844687711Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family5e-1064.3
NC_009664:4347718:435952443595244360177654Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family1e-0859.7
NC_015656:2900730:291491029149102915503594Frankia symbiont of Datisca glomerata chromosome, complete genomeregulatory protein TetR1e-0859.7
NC_015957:7249873:726786572678657268458594Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR1e-0859.7
NC_013521:2193203:219552721955272196075549Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator, tetR family4e-0858.2
NC_014310:1750817:175724317572431757839597Ralstonia solanacearum PSI07 megaplasmid, complete sequenceTetR family transcriptional regulator4e-0858.2
NC_014323:3976351:400574140057414006313573Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein1e-0756.6
NC_009664:4423829:442487344248734425499627Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family9e-0856.6
NC_014666:1117000:113313811331381133842705Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR2e-0755.8
NC_017955:343931:358000358000358650651Modestobacter marinus, complete genomeTetR family transcriptional regulator3e-0754.7
NC_013929:5850599:586993558699355870588654Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator8e-0753.5
NC_011283:2836000:286975928697592870352594Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator TetR family8e-0753.5
NC_015580:3411802:342310334231033423645543Novosphingobium sp. PP1Y, complete genomeTetR family transcriptional regulator1e-0653.1
NC_013850:2846069:285969628596962860289594Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, TetR family1e-0653.1
NC_014666:2629799:264302426430242643593570Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR1e-0653.1
NC_016147:151224:176252176252176779528Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeTetR/AcrR family transcriptional regulator1e-0652.8
NC_015709:1769806:178762117876211788307687Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeTetR family transcriptional regulator1e-0652.8
NC_014318:1537732:154140715414071541916510Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator1e-0652.8
NC_015951:107360:117786117786118340555Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeregulatory protein TetR2e-0652.8
NC_013739:5535945:554067855406785541244567Conexibacter woesei DSM 14684, complete genometranscriptional regulator, TetR family2e-0652.4
NC_014323:3976351:400723340072334007799567Herbaspirillum seropedicae SmR1 chromosome, complete genomeTetR family transcription regulator protein3e-0652
NC_016582:7699420:770664677066467707239594Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_014666:8016066:804637880463788046989612Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR3e-0652
NC_012489:3503632:350485135048513505480630Gemmatimonas aurantiaca T-27, complete genomeTetR family transcriptional regulator3e-0651.6
NC_014307:1131241:114012811401281140727600Ralstonia solanacearum CFBP2957 chromosome, complete genomeTetR family transcriptional regulator4e-0651.2
NC_015434:2683631:269688526968852697439555Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator4e-0651.2
NC_015138:4205986:422692442269244227514591Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeregulatory protein TetR5e-0651.2
NC_009664:10718:169251692517515591Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family5e-0650.8
NC_012704:696374:705911705911706603693Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family5e-0650.8