Pre_GI: BLASTP Hits

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Query: NC_013716:1178383:1202798 Citrobacter rodentium ICC168, complete genome

Start: 1202798, End: 1203121, Length: 324

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1165232:119005711900571190377321Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein4e-1683.2
NC_016860:1205282:123029012302901230610321Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-1683.2
NC_011080:1209935:123439112343911234711321Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein4e-1683.2
NC_006905:1186895:121268912126891213009321Salmonella enterica subsp. enterica serovar Choleraesuis strputative periplasmic protein6e-1682.8
NC_000913:1087062:110463711046371104948312Escherichia coli K12, complete genomehypothetical protein1e-1478.2
NC_004337:1065609:108271910827191083030312Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-1478.2
NC_015968:1709680:172074017207401721060321Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein4e-1166.6
NC_014121:2629075:263936026393602639680321Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein6e-1062.8
NC_016514:1701273:171055317105531710873321Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YmdA6e-0959.3