Pre_GI: BLASTP Hits

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Query: NC_013716:1138441:1166182 Citrobacter rodentium ICC168, complete genome

Start: 1166182, End: 1167294, Length: 1113

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:1101093:1130749113074911318581110Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-172603
NC_016514:891772:9279919279919293131323Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YdiK7e-172603
NC_016612:5600177:5623751562375156248571107Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-163575
NC_015567:2125415:2137775213777521388871113Serratia sp. AS9 chromosome, complete genomehypothetical protein4e-150531
NC_015566:2125403:2137763213776321388751113Serratia sp. AS12 chromosome, complete genomehypothetical protein4e-150531
NC_012917:4646491:4658304465830446595241221Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-148525
NC_004547:138500:1414491414491427651317Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-148524
NC_009832:2211154:2243817224381722449381122Serratia proteamaculans 568, complete genomeprotein of unknown function UPF01185e-146517
NC_014562:469154:4873444873444885821239Pantoea vagans C9-1 chromosome, complete genomeUPF0118 inner membrane protein ydiK3e-137488
NC_008781:1038158:1038158103815810393421185Polaromonas naphthalenivorans CJ2, complete genomeprotein of unknown function UPF01186e-78291
NC_004578:3817330:3818856381885638199201065Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-70267
NC_009485:7626677:7649691764969176507521062Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein1e-66253
NC_008260:2961291:2973948297394829750691122Alcanivorax borkumensis SK2, complete genomehypothetical protein5e-66251
NC_013173:953633:9830699830699841661098Desulfomicrobium baculatum DSM 4028, complete genomeprotein of unknown function UPF01181e-62240
NC_016112:2903767:2910845291084529118941050Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein7e-51201
NC_013851:949973:9750569750569762611206Allochromatium vinosum DSM 180 chromosome, complete genomeprotein of unknown function UPF01185e-46185
NC_013960:1587761:1600461160046116015371077Nitrosococcus halophilus Nc4 chromosome, complete genomeprotein of unknown function UPF01187e-33141
NC_011184:2369662:2394686239468623957711086Vibrio fischeri MJ11 chromosome I, complete sequencehypothetical membrane spanning protein3e-29129
NC_007955:2531751:2538437253843725394741038Methanococcoides burtonii DSM 6242, complete genomeprotein of unknown function UPF01186e-24112
NC_014844:2158318:2160495216049521615951101Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein1e-22107
NC_012438:565419:5654195654195664831065Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomemembrane protein8e-21101
NC_010552:1212000:1227991122799112290611071Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function UPF01185e-1892.4
NC_010170:4739925:4762687476268747638561170Bordetella petrii, complete genomehypothetical protein2e-1790.5
NC_014330:505412:5286525286525298361185Brachyspira pilosicoli 95/1000 chromosome, complete genomehypothetical protein3e-1789.7
NC_018604:1943561:1963759196375919649431185Brachyspira pilosicoli WesB complete genomemembrane protein3e-1789.7
NC_019908:121178:1349301349301361141185Brachyspira pilosicoli P43/6/78 chromosome, complete genomehypothetical protein3e-1789.7
NC_018607:921923:9352159352159363991185Brachyspira pilosicoli B2904 chromosome, complete genomemembrane protein3e-1789.7
NC_010623:188143:2075592075592086441086Burkholderia phymatum STM815 chromosome 2, complete sequenceprotein of unknown function UPF01187e-1788.6
NC_018000:2054098:2059333205933320604091077Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein2e-1687.4
NC_014297:476510:5176585176585188031146Halalkalicoccus jeotgali B3 chromosome, complete genomehypothetical protein2e-1686.7
NC_014002:1408085:1419640141964014206621023Methanohalophilus mahii DSM 5219 chromosome, complete genomeprotein of unknown function UPF01181e-1584.3
NC_018000:1207231:1216930121693012180421113Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein5e-1582.4
NC_015410:2505168:2522702252270225237871086Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein5e-1375.5
NC_009714:671897:6762786762786773361059Campylobacter hominis ATCC BAA-381, complete genomeacid membrane antigen A2e-1273.9
NC_013922:331847:3894213894213906981278Natrialba magadii ATCC 43099 chromosome, complete genomeprotein of unknown function UPF01182e-1273.6
NC_008313:2629281:2631992263199226330951104Ralstonia eutropha H16 chromosome 1, complete sequencepredicted permease4e-1272.8
NC_012587:128845:1288451288451300201176Rhizobium sp. NGR234, complete genomepredicted transmembrane protein3e-1169.7
NC_014774:605085:6290106290106300951086Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeABC transporter permease1e-1067.4
NC_003047:536151:5361515361515373291179Sinorhizobium meliloti 1021, complete genomePUTATIVE PERMEASE TRANSMEMBRANE TRANSPORT PROTEIN2e-1067
NC_008577:3485878:3484779348477934858881110Shewanella sp. ANA-3 chromosome 1, complete sequenceprotein of unknown function UPF01182e-1067
NC_020304:1222000:1236581123658112377561176Desulfocapsa sulfexigens DSM 10523, complete genomeputative permease3e-1066.6
NC_016629:3496630:3521457352145735225331077Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein3e-1066.6
NC_016632:830000:8473928473928484741083Serratia symbiotica str. 'Cinara cedri' chromosome, completehypothetical protein1e-0861.2
NC_013194:634039:6531566531566542741119Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeprotein of unknown function UPF01181e-0860.8
NC_006322:3198829:3216386321638632174951110Bacillus licheniformis ATCC 14580, complete genomeYueF1e-0757.8
NC_015416:2723189:2726903272690327281291227Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein3e-0756.6
NC_014408:1455851:1468657146865714696641008Methanothermobacter marburgensis str. Marburg chromosome, completehypothetical protein4e-0755.8
NC_019977:468568:4889484889484900181071Methanomethylovorans hollandica DSM 15978, complete genomeputative permease9e-0755.1
NC_015680:369777:379213379213380193981Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein3e-0653.1
NC_013156:127000:1443011443011453021002Methanocaldococcus fervens AG86, complete genomeprotein of unknown function UPF01189e-0651.6
NC_010508:1865602:1876517187651718776891173Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceprotein of unknown function UPF01189e-0651.6