Pre_GI: BLASTP Hits

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Query: NC_013410:3105121:3111897 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3111897, End: 3114302, Length: 2406

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013410:3105121:3115276311527631177652490Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein1e-159564
NC_013410:1651000:1690560169056016926352076Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein4e-117422
NC_009663:2023941:2031923203192320339081986Sulfurovum sp. NBC37-1, complete genomehypothetical protein1e-77291
NC_017243:2857681:2889121288912128913852265Brachyspira intermedia PWS/A chromosome, complete genomelipoprotein8e-73275
NC_013410:2179342:2183859218385921849381080Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein4e-71270
NC_014150:1099507:1106682110668211089072226Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein8e-63242
NC_005139:2201820:2247491224749122489931503Vibrio vulnificus YJ016 chromosome I, complete sequencemembrane associated lipoprotein precursor1e-60235
NC_013410:3105121:312038531203853121167783Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein4e-54213
NC_013410:1651000:168393216839321684555624Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein3e-54213
NC_016633:2655811:2659489265948926604931005Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomesurface protein 26-residue repeat-containing protein3e-51204
NC_017098:1278712:1291544129154412927461203Spirochaeta africana DSM 8902 chromosome, complete genomesurface protein 26-residue repeat-containing protein7e-50199
NC_014150:3139852:3163047316304731645071461Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein4e-49197
NC_013410:1651000:169277316927731693477705Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein4e-47190
NC_017243:1041917:1049195104919510517832589Brachyspira intermedia PWS/A chromosome, complete genomelipoprotein4e-46187
NC_013410:1651000:168980516898051690551747Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein9e-46185
NC_014150:1099507:1111792111179211136211830Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein8e-44179
NC_017098:1542284:1566821156682115679511131Spirochaeta africana DSM 8902 chromosome, complete genomesurface protein 26-residue repeat-containing protein3e-43177
NC_014150:3139852:3165988316598831685612574Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein2e-42174
NC_017098:1278712:1290351129035112914931143Spirochaeta africana DSM 8902 chromosome, complete genomesurface protein 26-residue repeat-containing protein2e-40168
NC_013037:2305585:2305585230558523074891905Dyadobacter fermentans DSM 18053, complete genomelipoprotein4e-40167
NC_017243:2048387:2054071205407120566592589Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein7e-40166
NC_017243:2048387:2057171205717120597652595Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein7e-40166
NC_012225:880983:8902368902368928302595Brachyspira hyodysenteriae WA1, complete genomehypothetical protein6e-40166
NC_012225:880983:8997338997339023062574Brachyspira hyodysenteriae WA1, complete genomehypothetical protein1e-39165
NC_017243:2048387:2065593206559320681662574Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein1e-39165
NC_014150:3139852:3175330317533031779182589Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein5e-39163
NC_013410:1651000:1680659168065916819001242Fibrobacter succinogenes subsp. succinogenes S85 chromosome,lipoprotein6e-39163
NC_005966:2110549:2133000213300021346311632Acinetobacter sp. ADP1, complete genomehypothetical protein1e-38162
NC_014150:3139852:3168952316895231715402589Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein9e-39162
NC_014150:3139852:3174087317408731752741188Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein7e-39162
NC_012225:880983:8875348875348901252592Brachyspira hyodysenteriae WA1, complete genomehypothetical protein1e-37158
NC_017243:2048387:2052528205252820536911164Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein8e-37155
NC_017243:599814:6013286013286036642337Brachyspira intermedia PWS/A chromosome, complete genomelipoprotein2e-33145
NC_017243:1041917:1054446105444610568332388Brachyspira intermedia PWS/A chromosome, complete genomelipoprotein6e-33143
NC_012225:880983:8932198932198956122394Brachyspira hyodysenteriae WA1, complete genomehypothetical protein9e-33142
NC_017243:2048387:2060380206038020627672388Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein8e-32139
NC_014150:3139852:3171641317164131740432403Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein6e-31136
NC_012225:880983:8968218968218992352415Brachyspira hyodysenteriae WA1, complete genomehypothetical protein2e-30134
NC_017098:1278712:129665112966511297631981Spirochaeta africana DSM 8902 chromosome, complete genomesurface protein 26-residue repeat-containing protein4e-30134
NC_017243:2048387:2062851206285120652652415Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein4e-30133
NC_014150:1099507:1109127110912711113912265Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein2e-27124
NC_013721:1204566:1209370120937012130533684Gardnerella vaginalis 409-05, complete genomeLPXTG-motif cell wall anchor domain protein2e-26121
NC_015844:3899500:391603739160373916963927Zobellia galactanivorans, complete genomelipoprotein4e-26120
NC_017098:986428:101395610139561014912957Spirochaeta africana DSM 8902 chromosome, complete genomehypothetical protein7e-24113
NC_002973:505978:5123815123815144952115Listeria monocytogenes str. 4b F2365, complete genomehypothetical protein4e-22107
NC_014150:3139852:316244031624403162982543Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein5e-21103
NC_015725:430500:431350431350432201852Mycoplasma bovis Hubei-1 chromosome, complete genomeputative surface prolipoprotein2e-1894.7
NC_002973:505978:5146315146315167002070Listeria monocytogenes str. 4b F2365, complete genomelipoprotein, putative7e-1893.2
NC_012984:2681548:2682173268217326844252253Lactobacillus plantarum JDM1, complete genomecell surface protein (putative)1e-1689.4
NC_012225:1071159:108455010845501085059510Brachyspira hyodysenteriae WA1, complete genomehypothetical protein1e-1585.9
NC_007633:790881:8172268172268184251200Mycoplasma capricolum subsp. capricolum ATCC 27343, completelipoprotein, putative2e-1171.6
NC_012039:185607:200377200377201036660Campylobacter lari RM2100, complete genomeconserved hypothetical protein (DUF285 domain protein)3e-1171.2
NC_017243:1041917:105180110518011052304504Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein8e-1169.7
NC_015311:1157679:1166517116651711678871371Prevotella denticola F0289 chromosome, complete genomehypothetical protein1e-0965.9
NC_014751:225477:239495239495240445951Mycoplasma leachii PG50 chromosome, complete genomelipoprotein, PARCEL family5e-0860.5
NC_014751:772912:803912803912804274363Mycoplasma leachii PG50 chromosome, complete genomePARCEL domain protein6e-0860.1
NC_012520:28324:3804338043396171575Rhodococcus opacus B4 plasmid pROB01, complete sequencehypothetical protein8e-0653.1
NC_015428:2019500:2029406202940620322582853Lactobacillus buchneri NRRL B-30929 chromosome, complete genomelipoprotein9e-0652.8