Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:3105121 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
31051213106119999metallophosphoesteraseQuickGO ontologyBLASTP
310619531075021308deoxyguanosinetriphosphate triphosphohydrolaseQuickGO ontologyBLASTP
31075153108213699pyrimidine 5-nucleotidaseQuickGO ontologyBLASTP
31082463109052807ABC transporterQuickGO ontologyBLASTP
310906331101751113hypothetical protein
31101783110738561hypothetical protein
31109923111882891hypothetical proteinBLASTP
311189731143022406lipoproteinQuickGO ontologyBLASTP
31143983115135738hypothetical proteinBLASTP
311527631177652490lipoproteinQuickGO ontologyBLASTP
311782631201112286ATPase AAAQuickGO ontologyBLASTP
31203853121167783lipoproteinQuickGO ontologyBLASTP
31212663122075810PDZDHRGLGF domain-containing proteinQuickGO ontologyBLASTP
312226631246562391Organic solvent tolerance protein OstA-like proteinQuickGO ontologyBLASTP
31247083125283576maf proteinQuickGO ontologyBLASTP
31252873126231945hypothetical proteinBLASTP
31262433126827585imidazoleglycerol-phosphate dehydrataseQuickGO ontologyBLASTP
312701131280691059hypothetical protein