Pre_GI: BLASTP Hits

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Query: NC_013410:2179342:2205140 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2205140, End: 2207011, Length: 1872

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007912:4579873:4579873457987345834333561Saccharophagus degradans 2-40, complete genomeMethionine biosynthesis MetW1e-49198
NC_008752:3955327:396062439606243961601978Acidovorax avenae subsp. citrulli AAC00-1, complete genomeglycoside hydrolase, family 109e-35149
NC_015966:1145974:1154810115481011572812472Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeendo-1,4-beta-xylanase6e-31136
NC_013410:1152188:1153807115380711557321926Fibrobacter succinogenes subsp. succinogenes S85 chromosome,carbohydrate binding family 67e-26119
NC_013410:2179342:2179342217934221814202079Fibrobacter succinogenes subsp. succinogenes S85 chromosome,glycoside hydrolase family protein3e-25117
NC_013410:2179342:2203100220310022047581659Fibrobacter succinogenes subsp. succinogenes S85 chromosome,carbohydrate binding family 61e-1792
NC_011832:1949717:1953338195333819564453108Candidatus Methanosphaerula palustris E1-9c, complete genomeCarbohydrate binding family 64e-1480.5
NC_013132:6385223:6388702638870263921003399Chitinophaga pinensis DSM 2588, complete genomeCarbohydrate binding family 64e-1480.1
NC_007645:3870466:3872025387202538738511827Hahella chejuensis KCTC 2396, complete genomeprobable glycosyl hydrolase1e-1275.9
NC_016627:2799453:2801372280137228037592388Clostridium clariflavum DSM 19732 chromosome, complete genomebeta-1,4-xylanase1e-1172
NC_016582:8711199:8718179871817987192551077Streptomyces bingchenggensis BCW-1 chromosome, complete genomebeta-1,4-xylanase7e-1169.3
NC_019970:929666:9354509354509364661017Thermoanaerobacterium thermosaccharolyticum M0795, complete genomebeta-1,4-xylanase3e-1067.4
NC_011832:913994:9326839326839352202538Candidatus Methanosphaerula palustris E1-9c, complete genomeCarbohydrate binding family 63e-1067.4
NC_013410:3685588:3687972368797236896211650Fibrobacter succinogenes subsp. succinogenes S85 chromosome,glycoside hydrolase family protein2e-0861.2
NC_006395:217139:2184032184032206972295Haloarcula marismortui ATCC 43049 plasmid pNG700, completeputative carbohydrate binding module (family 6) protein5e-0860.1
NC_015944:353652:3723353723353745032169Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencecarbohydrate binding module (family 6) protein8e-0859.3
NC_014391:277555:2850832850832866931611Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeglycoside hydrolase family 10 protein1e-0758.9
NC_010162:9311465:9311465931146593125261062Sorangium cellulosum 'So ce 56', complete genomeO-glycosyl hydrolase2e-0654.7
NC_012034:1925983:1938607193860719430434437Anaerocellum thermophilum DSM 6725, complete genomeglycoside hydrolase family 483e-0654.3
NC_014720:980000:1006806100680610112364431Caldicellulosiruptor kronotskyensis 2002 chromosome, completecellulose 1,4-beta-cellobiosidase3e-0654.3
NC_015966:1145974:1166222116622211677181497Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeendo-1,4-beta-xylanase4e-0653.5
NC_014392:1769803:1796734179673418005313798Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeCellulose 1,4-beta-cellobiosidase9e-0652.4