Pre_GI: BLASTP Hits

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Query: NC_013410:1152188:1166166 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1166166, End: 1167059, Length: 894

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013410:2586500:2596961259696125979861026Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein3e-81301
NC_012778:1573847:1596737159673715978731137Eubacterium eligens ATCC 27750, complete genomehypothetical protein5e-52204
NC_015977:2874000:287818328781832878575393Roseburia hominis A2-183 chromosome, complete genomehypothetical protein2e-33142
NC_005090:1082213:109308210930821093966885Wolinella succinogenes DSM 1740, complete genomehypothetical protein9e-26117
NC_007575:601256:603977603977604858882Sulfurimonas denitrificans DSM 1251, complete genomehypothetical protein2e-25116
NC_014363:480049:498609498609499430822Olsenella uli DSM 7084 chromosome, complete genomeKilA-N, DNA-binding domain protein1e-24114
NC_015160:1491258:150936215093621509934573Odoribacter splanchnicus DSM 20712 chromosome, complete genomeKilA-N, DNA-binding domain6e-24111
NC_015177:1859879:187857318785731879451879Pedobacter saltans DSM 12145 chromosome, complete genomeKilA-N, DNA-binding domain protein1e-20100
NC_009615:3581619:359715735971573597714558Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein7e-2098.2
NC_014933:901897:911297911297911863567Bacteroides helcogenes P 36-108 chromosome, complete genomeKilA-N, DNA-binding domain protein2e-1996.3
NC_015164:3099097:310169531016953102318624Bacteroides salanitronis DSM 18170 chromosome, complete genomeKilA-N, DNA-binding domain3e-1892.8
NC_004663:3827521:383807538380753838701627Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein8e-1891.3
NC_016609:1305570:133333613333361333746411Niastella koreensis GR20-10 chromosome, complete genomeKilA-N, DNA-binding domain-containing protein9e-1890.9
NC_015160:1491258:150665415066541507229576Odoribacter splanchnicus DSM 20712 chromosome, complete genomeKilA-N, DNA-binding domain2e-1789.7
NC_006347:1585191:158650515865051587035531Bacteroides fragilis YCH46, complete genomehypothetical protein2e-1583.6
NC_004663:44647:744937449374999507Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein4e-1582
NC_009615:3581619:359656935965693597132564Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein7e-1581.3
NC_013061:3390399:341116134111613411622462Pedobacter heparinus DSM 2366, complete genomehypothetical protein4e-1479
NC_002950:1511955:153879015387901539257468Porphyromonas gingivalis W83, complete genomehypothetical protein8e-1374.3
NC_009614:1461628:147893414789341479494561Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein4e-1168.9
NC_014363:480049:501986501986502213228Olsenella uli DSM 7084 chromosome, complete genomehypothetical protein8e-0754.7