Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:2586500 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
258654625890202475glycogenstarchalpha-glucan phosphorylaseQuickGO ontologyBLASTP
258914825901671020hypothetical proteinBLASTP
25901772591175999hypothetical proteinBLASTP
25913112591475165hypothetical protein
25918042592463660hypothetical protein
25924632593134672hypothetical protein
259315925942141056hypothetical proteinBLASTP
259430125956771377hypothetical protein
25956862596264579hypothetical proteinBLASTP
25962852596893609hypothetical protein
259696125979861026hypothetical proteinBLASTP
25979892598396408hypothetical proteinBLASTP
259843226007562325ATPase AAAQuickGO ontologyBLASTP
26008702601493624N-acetyltransferase GCN5QuickGO ontologyBLASTP
260178826028551068phosphoglycerate mutaseQuickGO ontologyBLASTP
26028552603601747NAD-binding domain 4 proteinQuickGO ontologyBLASTP
260359826051391542sodiumproline symporterQuickGO ontologyBLASTP
26052892606035747hypothetical protein
2606609260668476tRNA-GlyQuickGO ontologyBLASTP
2607069260714476tRNA-GlyQuickGO ontologyBLASTP
2607454260752976tRNA-GlyQuickGO ontologyBLASTP
260762826087641137oxygen-independent coproporphyrinogen III oxidaseQuickGO ontologyBLASTP
260877626101821407Cl- channel voltage-gated family proteinQuickGO ontologyBLASTP