Pre_GI: BLASTP Hits

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Query: NC_013199:2426686:2433258 Lactobacillus rhamnosus Lc 705, complete genome

Start: 2433258, End: 2434148, Length: 891

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013198:2458080:2464226246422624655391314Lactobacillus rhamnosus GG, complete genomesensor histidine kinase, PrcK8e-159559
NC_008526:2373190:238331623833162384194879Lactobacillus casei ATCC 334, complete genome1e-85316
NC_010999:2516000:252340825234082524250843Lactobacillus casei, complete genomeHistidin kinase (Histidine protein kinase PlnB) (Histidine protein kinase PlnB; sensor protein)2e-83309
NC_014334:2307950:2314714231471423160121299Lactobacillus casei str. Zhang chromosome, complete genomeputative sensor histidine kinase PrcK9e-68256
NC_014554:337268:3641573641573654851329Lactobacillus plantarum subsp. plantarum ST-III chromosome,histidine protein kinase PlnB; sensor protein2e-1376.6
NC_004567:343500:3717053717053730331329Lactobacillus plantarum WCFS1, complete genomehistidine protein kinase PlnB; sensor protein2e-1376.6
NC_020207:2240115:2251083225108322523661284Enterococcus faecium NRRL B-2354, complete genomeputative signal transduction protein and ATPase2e-1067
NC_014328:3823902:3838941383894138402901350Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative two-component sensor histidine kinase4e-0962.4
NC_002976:1540794:1559116155911615604051290Staphylococcus epidermidis RP62A, complete genomeaccessory gene regulator protein C2e-0859.7
NC_020164:887510:8875108875108887991290Staphylococcus warneri SG1, complete genomeaccessory gene regulator C3e-0859.3
NC_014393:1022843:1045758104575810470621305Clostridium cellulovorans 743B chromosome, complete genomeATP-binding region ATPase domain-containing protein1e-0757
NC_009785:387910:4086624086624099811320Streptococcus gordonii str. Challis substr. CH1, complete genome9e-0754.3
NC_012004:470492:4781204781204794391320Streptococcus uberis 0140J, complete genomesensor histidine kinase1e-0653.9