Pre_GI: BLASTP Hits

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Query: NC_013199:2058857:2083121 Lactobacillus rhamnosus Lc 705, complete genome

Start: 2083121, End: 2083432, Length: 312

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013198:2088780:211213921121392112450312Lactobacillus rhamnosus GG, complete genometranscriptional regulator, xre family9e-54208
NC_010999:2155714:217654621765462176857312Lactobacillus casei, complete genomeTranscriptional regulator, xre family5e-49192
NC_014334:1954333:197692119769211977232312Lactobacillus casei str. Zhang chromosome, complete genomeXRE family transcriptional regulator5e-49192
NC_013199:1966334:196755319675531967864312Lactobacillus rhamnosus Lc 705, complete genomeDNA-binding protein, xre family2e-1270.9
NC_014334:1848340:185643518564351856764330Lactobacillus casei str. Zhang chromosome, complete genomeputative transcriptional regulator4e-0650.1
NC_013941:733286:745237745237745821585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHelix-turn-helix domain protein7e-0649.3
NC_011745:1287714:129306912930691293653585Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator7e-0649.3
NC_008253:1228485:123373712337371234321585Escherichia coli 536, complete genomeprobable transcriptional regulator7e-0649.3