Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:569856:576167 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 576167, End: 576376, Length: 210

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:569856:580457580457580762306Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeCcdB protein8e-1785.9
NC_012917:985617:995673995673995978306Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeCcdB protein6e-1682.8
NC_012880:3529017:353600135360013536306306Dickeya dadantii Ech703, complete genomeCcdB protein1e-1581.6
NC_012880:3982383:399103039910303991335306Dickeya dadantii Ech703, complete genomeCcdB protein1e-1581.6
NC_012912:4012112:402065240206524020957306Dickeya zeae Ech1591, complete genomeCcdB protein3e-1580.5
NC_009790:42112:575065750657811306Escherichia coli E24377A plasmid pETEC_74, complete sequencecytotoxic protein CcdB7e-1165.9
NC_007941:11319:507705077051096327Escherichia coli UTI89 plasmid pUTI89, complete sequenceplasmid maintenance protein CcdB7e-1165.9