Pre_GI: BLASTP Hits

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Query: NC_012848:320883:342637 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,

Start: 342637, End: 344259, Length: 1623

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008702:1432952:1460596146059614620201425Azoarcus sp. BH72, complete genomeprobable cytochrome c oxidase, cbb3-type,subunit I6e-172604
NC_007298:778723:7835877835877850141428Dechloromonas aromatica RCB, complete genomeCytochrome c oxidase cbb3-type, subunit I1e-168593
NC_014910:3458475:3472486347248634739251440Alicycliphilus denitrificans BC chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit i2e-167589
NC_015422:1163752:1170428117042811718671440Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit I2e-167589
NC_007492:2035761:2039457203945720408811425Pseudomonas fluorescens PfO-1, complete genomeCytochrome c oxidase cbb3-type, subunit I2e-167589
NC_009379:435404:4459844459844474261443Polynucleobacter sp. QLW-P1DMWA-1, complete genomecytochrome c oxidase, cbb3-type, subunit I3e-167588
NC_021150:1965264:1987433198743319888751443Azotobacter vinelandii CA6, complete genomecbb3-type cytochrome c oxidase subunit I1e-166587
NC_012560:1965251:1987420198742019888621443Azotobacter vinelandii DJ, complete genomecytochrome c oxidase, cbb3-type, subunit I1e-166587
NC_016602:1994110:1994110199411019955371428Vibrio furnissii NCTC 11218 chromosome 1, complete sequencecytochrome c oxidase, Cbb3-type, subunit I2e-166585
NC_014541:2122788:2135700213570021371301431Ferrimonas balearica DSM 9799 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit I4e-166584
NC_016745:2229271:2234039223403922353761338Oceanimonas sp. GK1 chromosome, complete genomecbb3-type cytochrome c oxidase subunit I6e-165581
NC_011992:1038985:1042150104215010435891440Acidovorax ebreus TPSY, complete genomecytochrome c oxidase, cbb3-type, subunit I1e-164580
NC_008782:1136732:1139894113989411413331440Acidovorax sp. JS42, complete genomecytochrome c oxidase, cbb3-type, subunit I1e-164580
NC_009052:2512373:2547126254712625485621437Shewanella baltica OS155, complete genomecytochrome c oxidase, cbb3-type, subunit I8e-165580
NC_009997:2635025:2635025263502526364611437Shewanella baltica OS195, complete genomecytochrome c oxidase, cbb3-type, subunit I8e-165580
NC_016901:2594942:2594942259494225963781437Shewanella baltica OS678 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit I8e-165580
NC_009092:2282437:2297760229776022991871428Shewanella loihica PV-4, complete genomecytochrome c oxidase, cbb3-type, subunit I4e-163575
NC_007492:2035761:2035761203576120372031443Pseudomonas fluorescens PfO-1, complete genomeCytochrome c oxidase cbb3-type, subunit I1e-162573
NC_007005:4062311:4077945407794540793871443Pseudomonas syringae pv. syringae B728a, complete genomeCytochrome c oxidase cbb3-type, subunit I2e-161569
NC_004578:2185907:2186515218651521879571443Pseudomonas syringae pv. tomato str. DC3000, complete genomecytochrome c oxidase, cbb3-type, subunit I4e-160565
NC_005773:3851433:3866057386605738674991443Pseudomonas syringae pv. phaseolicola 1448A, complete genomecytochrome c oxidase, cbb3-type, subunit I3e-160565
NC_013422:2004478:2015536201553620169961461Halothiobacillus neapolitanus c2, complete genomecytochrome c oxidase, cbb3-type, subunit I3e-151535
NC_009465:29735:3979839798412161419Candidatus Vesicomyosocius okutanii HA, complete genomecbb3-type cytochrome c oxidase subunit I5e-147521
NC_014934:2223822:2223822222382222260202199Cellulophaga algicola DSM 14237 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit i7e-147521
NC_020126:7896447:7918373791837379207332361Myxococcus stipitatus DSM 14675, complete genomebifunctional cbb3-type cytochrome c oxidase subunit I/II4e-142505
NC_008095:6877388:6889429688942968918102382Myxococcus xanthus DK 1622, complete genomecytochrome c oxidase, cbb3-type, subunit I/II2e-141503
NC_010118:133256:1469581469581491682211Candidatus Sulcia muelleri GWSS, complete genomebifunctional cytochrome c oxidase subunits ccoN/O8e-124444
NC_009714:1329573:1332880133288013343461467Campylobacter hominis ATCC BAA-381, complete genomecbb3-type cytochrome c oxidase subunit I5e-109395
NC_011146:1429836:1432591143259114339941404Geobacter bemidjiensis Bem, complete genomecytochrome c oxidase subunit I3e-106386
NC_014166:3072703:3080775308077530822411467Arcobacter nitrofigilis DSM 7299 chromosome, complete genomecbb3-type cytochrome c oxidase subunit I3e-105382
NC_006513:1695487:1716225171622517178531629Azoarcus sp. EbN1, complete genomecytochrome C oxidase subunit transmembrane protein1e-51204
NC_015458:1938860:1939570193957019412191650Pusillimonas sp. T7-7 chromosome, complete genomecytochrome C oxidase subunit transmembrane protein1e-49197
NC_020541:1827689:1845788184578818474041617Rhodanobacter sp. 2APBS1, complete genomeCbb3-type cytochrome oxidase, subunit 14e-49196
NC_012856:2266187:2266187226618722678391653Ralstonia pickettii 12D chromosome 1, complete genomeCytochrome-c oxidase6e-48192
NC_012660:2045398:2066634206663420680311398Pseudomonas fluorescens SBW25 chromosome, complete genomeputative cytochrome C subunit protein1e-39164
NC_012440:373863:3738633738633752541392Persephonella marina EX-H1, complete genomeputative cytochrome c oxidase, subunit I1e-32141
NC_008699:1673181:1720885172088517225701686Nocardioides sp. JS614, complete genomecytochrome c oxidase, subunit I3e-1170.9
NC_012791:721813:7549587549587569461989Variovorax paradoxus S110 chromosome 1, complete genomecytochrome c oxidase, subunit I9e-1168.9
NC_014315:3278386:3287128328712832887261599Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit I8e-0962.4
NC_013959:1059004:1104867110486711062431377Sideroxydans lithotrophicus ES-1 chromosome, complete genomeNitric-oxide reductase6e-0859.7
NC_010172:57500:99011990111009271917Methylobacterium extorquens PA1, complete genomecytochrome c oxidase, subunit I7e-0859.3
NC_014973:1336500:1350536135053613519031368Geobacter sp. M18 chromosome, complete genomenitric-oxide reductase1e-0758.5
NC_007484:3429140:3440857344085734424551599Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c oxidase1e-0655.1
NC_011146:1429836:1443499144349914448721374Geobacter bemidjiensis Bem, complete genomecytochrome c oxidase subunit I2e-0655.1
NC_005125:760721:7916257916257932891665Gloeobacter violaceus PCC 7421, complete genomecytochrome c oxidase subunit I2e-0654.7
NC_002977:925588:9267429267429283671626Methylococcus capsulatus str. Bath, complete genomecytochrome c oxidase, subunit I2e-0654.3
NC_009956:88354:1138011138011163622562Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequencecytochrome c oxidase subunit I type2e-0654.3
NC_013124:1784117:1793314179331417952631950Acidimicrobium ferrooxidans DSM 10331, complete genomeCytochrome-c oxidase3e-0653.9
NC_011884:1029328:1047387104738710491501764Cyanothece sp. PCC 7425, complete genomecytochrome c oxidase, subunit I3e-0653.9
NC_003106:2060628:2061779206177920635601782Sulfolobus tokodaii str. 7, complete genomehypothetical cytochrome c oxidase polypeptide I5e-0653.1