Pre_GI: BLASTP Hits

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Query: NC_012668:3037345:3047684 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 3047684, End: 3048361, Length: 678

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011586:268927:291388291388292065678Acinetobacter baumannii AB0057 chromosome, complete genometetracycline repressor protein, class A2e-119428
NC_010410:3606826:364313736431373643814678Acinetobacter baumannii AYE, complete genometetracycline repressor protein2e-119428
NC_009838:81913:908869088691545660Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencehypothetical protein1e-75282
NC_010410:3606826:367271136727113673337627Acinetobacter baumannii AYE, complete genomeTetracycline repressor protein class G1e-52206
CU928145:4950723:497335049733504973976627Escherichia coli 55989 chromosome, complete genomeTetracycline repressor protein class B from transposon Tn107e-50197
NC_011748:4950723:497335049733504973976627Escherichia coli 55989, complete genometetracycline repressor protein TetR7e-50197
NC_010939:405477:417091417091417717627Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeTetracycline repressor protein class B from transposon Tn107e-50197
NC_003384:157158:179219179219179845627Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidtetracycline repressor protein7e-50197
NC_013365:92973:959939599396619627Escherichia coli O111:H- str. 11128 plasmid pO111_1, completeTetR family transcriptional regulator7e-50197
NC_017171:280762:286950286950287576627Acinetobacter baumannii MDR-ZJ06 chromosome, complete genometetracycline repressor protein TetR7e-50197
NC_017328:1075535:110734211073421107968627Shigella flexneri 2002017 chromosome, complete genomeTetracycline repressor protein class B from transposon Tn107e-50197
NC_017328:1075535:111874711187471119373627Shigella flexneri 2002017 chromosome, complete genomeTetracycline repressor protein class B from transposon Tn107e-50197
NC_017387:247462:288973288973289599627Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometetracycline repressor protein class G7e-50197
NC_020418:448687:458161458161458784624Morganella morganii subsp. morganii KT, complete genomehypothetical protein7e-50197
NC_011749:34056:448344483445460627Escherichia coli UMN026 plasmid p1ESCUM, complete sequenceTetR family transcriptional regulator7e-50197
NC_016860:4055117:406437340643734064996624Salmonella enterica subsp. enterica serovar Typhimurium strtetracycline repressor protein TetR7e-50196
NC_010519:1963256:197888119788811979504624Haemophilus somnus 2336 chromosome, complete genomeTetR family transcriptional regulator6e-49194
NC_009349:3396:339633964028633Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completetetracycline repressor protein TetR(E)6e-44177
NC_013929:3953046:395783739578373958523687Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator2e-22105
NC_017186:1320186:132825213282521328836585Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator1e-1996.7
NC_014318:1320170:132823613282361328820585Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator1e-1996.7
NC_003888:8613848:861831386183138618951639Streptomyces coelicolor A3(2), complete genomeTetR-family transcriptional regulator2e-1686.3
NC_014976:684000:689323689323690003681Bacillus subtilis BSn5 chromosome, complete genomeTranscriptional regulator1e-1066.2
NC_016111:986936:100046210004621001124663Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator7e-1064.3
NC_017904:1831071:183107118310711831727657Mycobacterium sp. MOTT36Y chromosome, complete genomeregulatory protein TetR1e-0963.2
NC_008268:442657:443606443606444277672Rhodococcus sp. RHA1, complete genomeprobable tetracycline repressor protein8e-0857.4
NC_019673:8161242:816215981621598162875717Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family6e-0754.3
NC_013595:41245:412454124541949705Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family7e-0754.3
NC_013929:5850599:586537458653745866114741Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator2e-0652.8
NC_010617:263985:268936268936269463528Kocuria rhizophila DC2201, complete genomeTetR family transcriptional regulator6e-0650.8