Pre_GI: BLASTP Hits

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Query: NC_011149:309556:321470 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 321470, End: 321691, Length: 222

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:329847:339520339520339828309Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-36150
NC_016863:332060:340018340018340326309Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein2e-36150
NC_016857:329849:339522339522339830309Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein2e-36150
NC_016856:332771:340729340729341037309Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein2e-36150
NC_016810:329849:339522339522339830309Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-36150
NC_003197:332086:340044340044340352309Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein2e-36150
NC_011080:333121:343928343928344149222Salmonella enterica subsp. enterica serovar Newport str. SL254,7e-36149
NC_016860:332087:340102340102340353252Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein5e-36149
NC_006905:326517:334610334610334963354Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-35146
NC_012125:326909:334555334555334833279Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein6e-35145
NC_006511:2540500:256605425660542566362309Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-34144
NC_011294:311796:319584319584319862279Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-34144
NC_016831:2667561:268392726839272684148222Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island protein5e-34142
NC_011205:329155:343726343726343947222Salmonella enterica subsp. enterica serovar Dublin str. CT_020218535e-34142
NC_011274:311843:338387338387338665279Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-33139