Pre_GI: BLASTP Hits

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Query: NC_011149:309556:319817 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 319817, End: 319957, Length: 141

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:326909:332957332957333097141Salmonella enterica subsp. enterica serovar Paratyphi C strainrhs core protein with extension3e-1890.1
NC_016831:2667561:268565926856592685823165Salmonella enterica subsp. enterica serovar Gallinarum/pullorumrhs core protein with extension1e-1685.1
NC_011080:333121:342275342275342415141Salmonella enterica subsp. enterica serovar Newport str. SL254,rhs core protein with extension1e-1684.7
NC_011205:329155:342075342075342215141Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853rhs core protein with extension1e-1582
NC_016822:1839739:1855406185540618588223417Shigella sonnei 53G, complete genomerhs core protein with extension1e-0858.5
NC_007384:1763375:1776639177663917799083270Shigella sonnei Ss046, complete genomerhs core protein with extension1e-0858.2