Pre_GI: BLASTP Hits

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Query: NC_011147:4297513:4318683 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 4318683, End: 4319897, Length: 1215

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016856:4563435:4586088458608845873291242Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sinner membrane protein YjeH8e-174610
NC_016810:4573172:4593838459383845950791242Salmonella enterica subsp. enterica serovar Typhimurium strputative permease8e-174610
NC_003197:4551880:4573257457325745744981242Salmonella typhimurium LT2, complete genomeputative transporter8e-174610
NC_011205:4564645:4585770458577045870321263Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein9e-174609
NC_016857:4573173:4593839459383945951011263Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74inner membrane protein YjeH9e-174609
NC_017046:4571833:4592499459249945937611263Salmonella enterica subsp. enterica serovar Typhimurium str. 798permease9e-174609
NC_006905:4486433:4507958450795845091991242Salmonella enterica subsp. enterica serovar Choleraesuis strputative transporter, cytoplasmic membrane protein9e-174609
NC_016612:1840325:1842596184259618438551260Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative transporter7e-127454
NC_004431:4955658:4978190497819049795061317Escherichia coli CFT073, complete genomeHypothetical protein yjeH5e-125447
NC_011745:4862218:4887804488780448890601257Escherichia coli ED1a chromosome, complete genomeinner membrane protein YjeH1e-124446
NC_013850:4993307:5012199501219950134491251Klebsiella variicola At-22 chromosome, complete genomeamino acid permease-associated region6e-117421
NC_011283:5170683:5190140519014051913901251Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein6e-117421
NC_020181:3518396:3536902353690235381491248Enterobacter aerogenes EA1509E, complete genomePutative permease6e-116417
NC_009648:4958500:4960842496084249620921251Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeinner membrane protein YjeH1e-115416
NC_012731:403670:4059714059714072211251Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeinner membrane protein YjeH3e-115415
NC_016845:411844:4141464141464153961251Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative transport4e-115415
NC_015556:1188500:1224746122474612260261281Pseudomonas fulva 12-X chromosome, complete genomeamino acid permease-associated region7e-63241
NC_016745:3170384:3186321318632131875861266Oceanimonas sp. GK1 chromosome, complete genomeputative transporter4e-56219
NC_016641:4290350:4291335429133542926451311Paenibacillus terrae HPL-003 chromosome, complete genomeamino acid transporter8e-2098.6
NC_016047:637778:6504276504276517131287Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeamino acid permease family protein5e-0962.4
NC_013947:4602959:4617028461702846183141287Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeamino acid permease-associated region9e-0962
NC_008391:404388:4194294194294207001272Burkholderia cepacia AMMD chromosome 2, complete sequenceamino acid permease-associated region4e-0756.2