Pre_GI: BLASTP Hits

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Query: NC_011147:2536000:2552898 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2552898, End: 2553029, Length: 132

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:309556:329577329577329708132Salmonella enterica subsp. enterica serovar Agona str. SL483,TnpA1e-1891.7
NC_016831:2667561:267598726759872676118132Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-1889.4
NC_016857:329849:347754347754347885132Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Putative transposase1e-1788.2
NC_010102:2762304:276889527688952769026132Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1788.2
NC_011094:334267:349221349221349352132Salmonella enterica subsp. enterica serovar Schwarzengrund strTnpA protein5e-1786.7
NC_011080:333121:352787352787352918132Salmonella enterica subsp. enterica serovar Newport str. SL254,TnpA1e-1685.1
NC_003198:331314:348345348345348476132Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1685.1
NC_004631:2615908:263263726326372632768132Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-1685.1
NC_016832:2612809:262953726295372629668132Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-1685.1
NC_012125:326909:342791342791342922132Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein8e-1682.4
NC_011294:311796:327834327834327941108Salmonella enterica subsp. enterica serovar Enteritidis str3e-1373.9
NC_016860:332087:34832534832534840884Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-0958.9