Pre_GI: BLASTP Hits

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Query: NC_011147:2536000:2551503 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2551503, End: 2551628, Length: 126

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2540500:255596725559672556092126Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-1788.2
NC_003197:332086:349674349674349889216Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein4e-1787
NC_011080:333121:354188354188354403216Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein4e-1787
NC_016810:329849:349152349152349367216Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-1787
NC_016831:2667561:267451126745112674726216Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-1787
NC_016856:332771:350359350359350574216Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein4e-1787
NC_016857:329849:349152349152349367216Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-1787
NC_016863:332060:349648349648349863216Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein4e-1787
NC_011294:311796:329214329214329429216Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-1685.1
NC_010102:2762304:276741027674102767625216Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1685.1
NC_012125:326909:344192344192344407216Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein1e-1685.1
NC_016832:2612809:262815526281552628268114Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein6e-1579.7
NC_003198:331314:349746349746349859114Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein6e-1579.7
NC_004631:2615908:263125426312542631367114Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein6e-1579.7