Pre_GI: BLASTP Hits

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Query: NC_011147:2536000:2548274 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2548274, End: 2548849, Length: 576

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2540500:255273825527382553313576Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative fimbrial subunit1e-106385
NC_004631:2615908:262801326280132628588576Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative fimbrial subunit4e-106383
NC_003198:331314:352525352525353100576Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative fimbrial subunit4e-106383
NC_011083:338910:351131351131351706576Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative fimbrial subunit4e-106383
NC_006905:326517:347104347104347679576Salmonella enterica subsp. enterica serovar Choleraesuis strputative fimbrial subunit4e-106383
NC_011094:334267:353409353409353984576Salmonella enterica subsp. enterica serovar Schwarzengrund strCS1 type fimbrial major subunit4e-105379
NC_016832:2612809:262491426249142625432519Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,CS1 type fimbrial major subunit1e-93342
NC_016818:3816000:383350238335023834005504Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeCS1 type fimbrial major subunit7e-27120
NC_020181:1317647:132306613230661323572507Enterobacter aerogenes EA1509E, complete genomeAlpha-fimbriae major subunit3e-26118
NC_017047:3869350:388931338893133889816504Rahnella aquatilis HX2 chromosome, complete genomeCS1 type fimbrial major subunit3e-26117
NC_015061:3801927:382192238219223822425504Rahnella sp. Y9602 chromosome, complete genomeCS1 type fimbrial major subunit3e-26117
NC_016835:405482:418216418216418746531Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,CS1 type fimbrial major subunit2e-1892
NC_005773:866157:909675909675910190516Pseudomonas syringae pv. phaseolicola 1448A, complete genomeadhesin major subunit pilin5e-1787.4