Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2510622 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2510622, End: 2511521, Length: 900

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251508625150862515985900Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCDNA replication2e-161568
NC_010067:2529750:258565725856572586556900Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-159559
NC_017328:303987:319215319215320105891Shigella flexneri 2002017 chromosome, complete genomeO protein1e-116419
NC_008258:269806:290308290308291132825Shigella flexneri 5 str. 8401, complete genomereplication protein O3e-113408
NC_009800:289000:302940302940303839900Escherichia coli HS, complete genomeputative replication protein O1e-104379
NC_013364:2645438:265048526504852651384900Escherichia coli O111:H- str. 11128, complete genomeputative replication protein1e-103376
NC_009778:2993218:301459530145953015491897Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-96352
NC_013850:1887556:190154319015431902436894Klebsiella variicola At-22 chromosome, complete genomereplication protein O3e-81301
NC_016845:1285435:129611212961121296963852Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-65248
NC_021066:2226826:224259322425932243426834Raoultella ornithinolytica B6, complete genomehypothetical protein2e-60233
NC_014306:3524980:356534435653443566291948Erwinia billingiae Eb661, complete genomePhage replication protein O5e-27121
NC_015566:3659318:3659318365931836604151098Serratia sp. AS12 chromosome, complete genomephage O protein family6e-1478.2
NC_009641:2101579:211896021189602119844885Staphylococcus aureus subsp. aureus str. Newman chromosome,phage regulatory protein2e-0653.1