Pre_GI: BLASTP Hits

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Query: NC_011147:1057259:1060069 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1060069, End: 1060725, Length: 657

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1063249:106605910660591066715657Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-126451
NC_010102:1137247:114005711400571140713657Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-126451
NC_011080:1944226:197601319760131976669657Salmonella enterica subsp. enterica serovar Newport str. SL254,hydrolase, carbon-nitrogen family2e-126451
NC_011094:1923870:194895319489531949609657Salmonella enterica subsp. enterica serovar Schwarzengrund strcarbon-nitrogen family hydrolase1e-125448
NC_011205:1345511:134832113483211348977657Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853carbon-nitrogen family hydrolase1e-125448
NC_011294:1220526:122333612233361223992657Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-125448
NC_012125:1897611:190041919004191901075657Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-125448
NC_003197:1945858:197039219703921971048657Salmonella typhimurium LT2, complete genomeputative amidohydrolase3e-125447
NC_016810:1903426:192796019279601928616657Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-125447
NC_016856:1957263:198179719817971982453657Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative amidohydrolase3e-125447
NC_016857:1903426:192796019279601928616657Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative amidohydrolase3e-125447
NC_016860:1943203:196593319659331966589657Salmonella enterica subsp. enterica serovar Typhimurium strputative amidohydrolase3e-125447
NC_016863:1905454:192998819299881930644657Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative amidohydrolase3e-125447
NC_017046:1902788:192732319273231927979657Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-125447
NC_008258:1873805:189016418901641890589426Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-53206
NC_004129:4093610:411246141124614113222762Pseudomonas fluorescens Pf-5, complete genomehydrolase, carbon-nitrogen family1e-1170.1