Pre_GI: BLASTP Hits

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Query: NC_011094:593100:605044 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 605044, End: 605208, Length: 165

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:2645438:265640126564012656568168Escherichia coli O111:H- str. 11128, complete genomehypothetical protein3e-21100
NC_017328:303987:313857313857314024168Shigella flexneri 2002017 chromosome, complete genomehypothetical protein8e-2199
NC_009800:289000:295797295797295964168Escherichia coli HS, complete genomehypothetical protein8e-2199
NC_013361:1558423:156516515651651565329165Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-2096.7
NC_011601:717072:725038725038725205168Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein7e-2095.9
NC_011205:609464:621881621881622051171Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein9e-1682
NC_016860:364981:372417372417372587171Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-1477.4
NC_013282:1200993:120951912095191209674156Cronobacter turicensis, complete genomehypothetical protein3e-0753.9