Pre_GI: BLASTP Hits

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Query: NC_011080:333121:354188 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 354188, End: 354403, Length: 216

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:332060:349648349648349863216Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein1e-36151
NC_016857:329849:349152349152349367216Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein1e-36151
NC_016856:332771:350359350359350574216Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein1e-36151
NC_016831:2667561:267451126745112674726216Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-36151
NC_016810:329849:349152349152349367216Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-36151
NC_003197:332086:349674349674349889216Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein1e-36151
NC_010102:2762304:276741027674102767625216Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-36150
NC_011294:311796:329214329214329429216Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-36149
NC_012125:326909:344192344192344407216Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein1e-35148
NC_011147:2536000:254207225420722542200129Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-1992.8
NC_011147:2536000:255150325515032551628126Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-1787
NC_006511:2540500:255596725559672556092126Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-1787
NC_016832:2612809:262815526281552628268114Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-1580.1
NC_003198:331314:349746349746349859114Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-1580.1
NC_004631:2615908:263125426312542631367114Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-1580.1