Pre_GI: BLASTP Hits

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Query: NC_011080:1750000:1756701 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1756701, End: 1757525, Length: 825

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:1726000:173352517335251734349825Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-153540
NC_003197:1753663:176034917603491761179831Salmonella typhimurium LT2, complete genomehypothetical protein5e-73274
NC_016810:1709695:171720217172021718032831Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-73274
NC_016856:1763640:177032617703261771156831Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein5e-73274
NC_016857:1709695:171720217172021718032831Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative outer membrane or exported protein5e-73274
NC_016860:1752000:175804017580401758864825Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-73274
NC_016863:1711832:171851817185181719348831Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein5e-73274
NC_017046:1709578:171708517170851717909825Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein5e-73274
NC_006511:1273162:128559512855951286422828Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-73274
NC_011147:1267005:127943812794381280265828Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-73274
NC_004631:1623511:163101816310181631851834Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-72272
NC_003198:1336894:134933113493311350164834Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-72272
NC_011149:1429523:144196214419621442786825Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-71270
NC_006905:1766000:177351317735131774343831Salmonella enterica subsp. enterica serovar Choleraesuis strputative outer membrane or exported5e-71267