Pre_GI: BLASTP Hits

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Query: NC_011080:1750000:1755604 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1755604, End: 1755942, Length: 339

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:1726000:173242917324291732767339Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein7e-62235
NC_011147:1267005:128102812810281281366339Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-61234
NC_006511:1273162:128718512871851287523339Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-61234
NC_004631:1623511:162991816299181630256339Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-61234
NC_003198:1336894:135092613509261351264339Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-61234
NC_006905:1766000:177241217724121772750339Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-61234
NC_011149:1429523:144354714435471443885339Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-61232
NC_016860:1752000:175705417570541757278225Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-38157
NC_008702:4064470:406555640655564065882327Azoarcus sp. BH72, complete genomeconserved hypothetical protein2e-1787.4