Pre_GI: BLASTP Hits

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Query: NC_011080:1209935:1234391 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1234391, End: 1234711, Length: 321

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1165232:119005711900571190377321Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein3e-57219
NC_016860:1205282:123029012302901230610321Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-57219
NC_006905:1186895:121268912126891213009321Salmonella enterica subsp. enterica serovar Choleraesuis strputative periplasmic protein1e-56218
NC_013716:1178383:120279812027981203121324Citrobacter rodentium ICC168, complete genomehypothetical protein4e-1683.2
NC_000913:1087062:110463711046371104948312Escherichia coli K12, complete genomehypothetical protein3e-1580.5
NC_004337:1065609:108271910827191083030312Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-1478.6
NC_016514:1701273:171055317105531710873321Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YmdA1e-1168.6
NC_015968:1709680:172074017207401721060321Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein5e-1166.6
NC_014121:2629075:263936026393602639680321Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-0960.8
NC_005810:1413305:143595414359541436337384Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein6e-0856.2
NC_020063:2077233:209838920983892098685297Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein1e-0755.5