Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:1209935:1232920 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1232920, End: 1233375, Length: 456

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1165232:118858611885861189041456Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1curlin minor subunit3e-82303
NC_003197:1207597:123113312311331231588456Salmonella typhimurium LT2, complete genomeminor curlin subunit precursor3e-82303
NC_006905:1186895:121121812112181211673456Salmonella enterica subsp. enterica serovar Choleraesuis strminor curlin subunit precursor, nucleator for assembly of adhesive surface organelles3e-82303
NC_017046:1164176:118731911873191187801483Salmonella enterica subsp. enterica serovar Typhimurium str. 798curlin monomer nucleation protein3e-82303
NC_016860:1205282:122879212287921229274483Salmonella enterica subsp. enterica serovar Typhimurium strminor curlin protein CsgB3e-82303
NC_011083:1216500:123548112354811235936456Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,minor curlin protein CsgB8e-82301
NC_003198:1117687:114140911414091141864456Salmonella enterica subsp. enterica serovar Typhi str. CT18,nucleation component of curlin monomers2e-81300
NC_013716:1178383:120132712013271201782456Citrobacter rodentium ICC168, complete genomeminor curlin subunit6e-68255
NC_004337:1065609:108011110801111080566456Shigella flexneri 2a str. 301, complete genomeminor curlin subunit precursor2e-62237
NC_000913:1087062:110317411031741103629456Escherichia coli K12, complete genomecurlin nucleator protein, minor subunit in curli complex3e-62236
AC_000091:1083798:110419211041921104647456Escherichia coli W3110 DNA, complete genomecurlin nucleator protein, minor subunit in curli complex3e-62236
NC_008258:1076922:109815310981531098608456Shigella flexneri 5 str. 8401, complete genomeminor curlin subunit precursor5e-62236
NC_014121:2629075:264073326407332641188456Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeminor curlin subunit2e-58224
NC_016514:1701273:170901317090131709504492Enterobacter cloacae EcWSU1 chromosome, complete genomeMinor curlin subunit2e-58223
NC_015968:1709680:171923417192341719689456Enterobacter asburiae LF7a chromosome, complete genomeCurlin associated repeat-containing protein4e-56216
NC_018868:1960542:201483420148342015388555Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomePPE repeat-containing protein4e-1167