Pre_GI: BLASTP Hits

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Query: NC_010658:3014371:3016590 Shigella boydii CDC 3083-94, complete genome

Start: 3016590, End: 3016890, Length: 301

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_000913:3256307:326823832682383268614377Escherichia coli K12, complete genomeRNase P RNA component precursor RnpB2e-50197
NC_011751:3710786:372515637251563725532377Escherichia coli UMN026 chromosome, complete genomeM12e-50197
CU928145:3608917:362518436251843625560377Escherichia coli 55989 chromosome, complete genomeM1 RNA2e-50197
NC_002695:3994970:400945140094514009827377Escherichia coli O157:H7 str. Sakai, complete genomeRnase P RNA2e-50197
NC_010473:3354052:336598333659833366359377Escherichia coli str. K-12 substr. DH10B, complete genomeRNase P RNA component precursor RnpB2e-50197
NC_011748:3608917:362518436251843625560377Escherichia coli 55989, complete genomeM1 RNA2e-50197
CP002516:613462:617777617777618153377Escherichia coli KO11, complete genomeRNA component of RNaseP2e-50197
NC_004741:3240909:325282832528283253204377Shigella flexneri 2a str. 2457T, complete genomeRNA component of RNase P2e-50197
NC_010468:613812:620133620133620433301Escherichia coli ATCC 8739, complete genome1e-49194
NC_009800:3307123:331885233188523319152301Escherichia coli HS, complete genomeRNase P, class A1e-49194
NC_011750:3768692:378307637830763783376301Escherichia coli IAI39 chromosome, complete genomeRNaseP_bact_a1e-49194
CU928160:3344746:335647433564743356774301Escherichia coli IAI1 chromosome, complete genomeRNaseP_bact_a1e-49194