Pre_GI: BLASTP Hits

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Query: NC_010501:3987615:3997926 Pseudomonas putida W619, complete genome

Start: 3997926, End: 3998156, Length: 231

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3752619:375856837585683759032465Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, XRE family2e-1994.4
NC_007946:289425:303574303574304038465Escherichia coli UTI89, complete genomeputative transcription regulator2e-1994
NC_013008:5382917:538604953860495386513465Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-1891.3
NC_011353:5426793:542998854299885430452465Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator2e-1891.3
NC_002655:5382557:538634353863435386807465Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-1891.3
NC_002695:5352554:535634053563405356804465Escherichia coli O157:H7 str. Sakai, complete genomeputative transcription regulator2e-1891.3
NC_020260:440000:450272450272450733462Cronobacter sakazakii Sp291, complete genomeXRE family transcriptional regulator2e-1787.4
NC_011000:3362382:337075833707583370985228Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative DNA-binding protein1e-1685.1
NC_014618:1103239:112495011249501125180231Enterobacter cloacae SCF1 chromosome, complete genomehelix-turn-helix domain-containing protein3e-1477.4
NC_014500:894136:905379905379905648270Dickeya dadantii 3937 chromosome, complete genomeMunI regulatory protein4e-1373.6
NC_014500:1862000:190350619035061903814309Dickeya dadantii 3937 chromosome, complete genomeMunI regulatory protein5e-1372.8
NC_014618:1103239:112464711246471124898252Enterobacter cloacae SCF1 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1271.2
NC_008358:2638245:269643226964322696641210Hyphomonas neptunium ATCC 15444, complete genomeDNA-binding protein3e-1167.4
NC_014500:894136:905690905690905920231Dickeya dadantii 3937 chromosome, complete genomeMunI regulatory protein1e-1065.5
NC_002936:1395432:140162414016241401842219Dehalococcoides ethenogenes 195, complete genomeDNA-binding protein9e-1165.5
NC_014306:3524980:355922535592253559434210Erwinia billingiae Eb661, complete genometranscriptional regulator, XRE family2e-0961.6
NC_007777:1018824:103280610328061033051246Frankia sp. CcI3, complete genometranscriptional regulator, XRE family2e-0961.2
NC_013939:1535071:155165715516571552193537Deferribacter desulfuricans SSM1, complete genomeXRE family transcriptional regulator2e-0960.8
NC_009455:273519:308492308492308707216Dehalococcoides sp. BAV1 chromosome, complete genomeXRE family transcriptional regulator7e-0959.3
NC_013890:103807:108816108816109031216Dehalococcoides sp. GT chromosome, complete genometranscriptional regulator, XRE family7e-0959.3
NC_013204:2234860:225284522528452253081237Eggerthella lenta DSM 2243, complete genometranscriptional regulator, XRE family3e-0857
NC_015064:1268223:128553412855341286067534Acidobacterium sp. MP5ACTX9 chromosome, complete genomehelix-turn-helix domain protein5e-0856.6
NC_010622:249625:297861297861298133273Burkholderia phymatum STM815 chromosome 1, complete sequencetranscriptional regulator, XRE family5e-0856.6
NC_006350:845513:873400873400873708309Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein8e-0855.8
NC_006569:69939:809618096181179219Silicibacter pomeroyi DSS-3 megaplasmid, complete sequenceDNA-binding protein, putative8e-0855.8
NC_016002:1975000:200038420003842000629246Pseudogulbenkiania sp. NH8B, complete genomeputative transcriptional regulator9e-0855.5
NC_010338:4481356:448954444895444489780237Caulobacter sp. K31, complete genometranscriptional regulator, XRE family1e-0755.1
NC_020134:1328302:133670913367091337281573Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative cytosolic protein1e-0755.1
NC_012526:300126:319440319440319682243Deinococcus deserti VCD115, complete genomeputative Transcriptional regulator, XRE family1e-0755.1
NC_011365:1103927:110644811064481106699252Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeXRE family transcriptional regulator2e-0754.7
NC_009718:1411793:143010814301081430635528Fervidobacterium nodosum Rt17-B1, complete genomecupin 2 domain-containing protein2e-0754.7
NC_015727:764744:769843769843770589747Cupriavidus necator N-1 plasmid BB1p, complete sequenceCro/CI family transcriptional regulator protein2e-0754.3
NC_020134:1328302:133941313394131339952540Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative DNA-binding protein3e-0753.9
NC_014098:1670327:1693767169376716949451179Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator of molybdate metabolism, XRE family4e-0753.5
NC_010125:381711:395573395573395824252Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulatory protein4e-0753.5
NC_009511:1746631:175245517524551752628174Sphingomonas wittichii RW1 chromosome, complete genomeXRE family transcriptional regulator3e-0753.5
NC_011979:773673:785967785967786287321Geobacter sp. FRC-32, complete genometranscriptional regulator, XRE family5e-0753.1
NC_015738:2956398:297737829773782977599222Eggerthella sp. YY7918, complete genomeputative transcriptional regulator8e-0752.4
NC_016641:2894899:291399229139922914339348Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator1e-0652.4
NC_012792:627500:637235637235637438204Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, XRE family2e-0651.6
NC_010002:4572573:461371146137114614031321Delftia acidovorans SPH-1, complete genometranscriptional regulator, XRE family1e-0651.6
NC_010170:4463000:448078044807804481085306Bordetella petrii, complete genomepredicted transcriptional regulator1e-0651.6
NC_010546:4923496:1108711087121721086Cyanothece sp. ATCC 51142 chromosome circular, complete sequencehypothetical protein1e-0651.6
NC_015732:982774:9996799996791000284606Spirochaeta caldaria DSM 7334 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0651.6
NC_014483:1146682:114946911494691149816348Paenibacillus polymyxa E681 chromosome, complete genomePutative HTH-type transcriptional regulator2e-0651.2
NC_015500:2197000:220108922010892201436348Treponema brennaborense DSM 12168 chromosome, complete genomehelix-turn-helix domain protein2e-0651.2
NC_006350:595893:606593606593607069477Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein2e-0650.8
NC_018750:3141196:314386131438613144049189Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-0650.8
NC_012808:4137000:413802541380254138288264Methylobacterium extorquens AM1, complete genomehypothetical protein3e-0650.8
NC_012808:58701:745447454474837294Methylobacterium extorquens AM1, complete genomeTranscriptional regulator, XRE family3e-0650.4
NC_009659:2849000:286908228690822869411330Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein3e-0650.4
NC_010617:774914:806803806803807018216Kocuria rhizophila DC2201, complete genomeXre family DNA-binding protein4e-0650.1
NC_010943:1332243:135334013533401353636297Stenotrophomonas maltophilia K279a, complete genomeputative HTH transcriptional regulator5e-0649.7
NC_010511:4313769:431880843188084319359552Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator6e-0649.7
NC_010511:871905:876281876281876832552Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator6e-0649.7
NC_020541:4122852:413357841335784133802225Rhodanobacter sp. 2APBS1, complete genomeputative transcriptional regulator7e-0649.3
NC_013510:747042:762300762300762866567Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family7e-0649.3