Pre_GI: BLASTP Hits

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Query: NC_010322:583842:590704 Pseudomonas putida GB-1 chromosome, complete genome

Start: 590704, End: 592269, Length: 1566

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015726:406450:4153564153564168881533Cupriavidus necator N-1 chromosome 1, complete sequenceintegrase/recombinase1e-132473
NC_020829:636773:6431226431226446361515Pseudomonas denitrificans ATCC 13867, complete genomeintegrase/recombinase6e-121434
NC_015458:2998000:3007611300761130091521542Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein9e-105380
NC_009524:1369395:1379784137978413813851602Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein4e-78292
NC_014640:6815264:6839010683901068405541545Achromobacter xylosoxidans A8 chromosome, complete genomeintegrase2e-62240
NC_009665:639914:6435776435776451301554Shewanella baltica OS185 chromosome, complete genomephage integrase family protein2e-58227
NC_011663:674069:6777386777386792911554Shewanella baltica OS223 chromosome, complete genomeintegrase family protein2e-58227
NC_014562:2563466:2593225259322525947601536Pantoea vagans C9-1 chromosome, complete genomehypothetical protein2e-56220
NC_003919:3396136:3408402340840234099821581Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein6e-54212
NC_016816:1545354:1557401155740115589451545Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family1e-51204
NC_014311:3076519:3115549311554931171411593Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase1e-48194
NC_012918:4648220:4648220464822046492331014Geobacter sp. M21 chromosome, complete genomeintegrase family protein4e-43176
NC_004547:1174650:1188401118840111898941494Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase3e-42173
NC_010067:191190:2015972015972029071311Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-40168
NC_009436:3117661:3143034314303431442361203Enterobacter sp. 638, complete genomephage integrase family protein9e-40165
NC_011741:4570498:4582485458248545838491365Escherichia coli IAI1 chromosome, complete genomeputative integrase9e-38158
CU928160:4570498:4582485458248545838491365Escherichia coli IAI1 chromosome, complete genomePutative integrase9e-38158
NC_008800:1090000:1100515110051511018731359Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative integrase/recombinase3e-35149
NC_014752:834616:845110845110845796687Neisseria lactamica ST-640, complete genomeintegrase3e-30133
NC_014394:2577949:259552625955262596365840Gallionella capsiferriformans ES-2 chromosome, complete genome5e-30132
NC_020829:940692:9899649899649915501587Pseudomonas denitrificans ATCC 13867, complete genomesite-specific recombinase, phage integrase family protein3e-29130
NC_012917:1840172:1851872185187218531761305Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein9e-29128
NC_013421:1819036:1850692185069218520021311Pectobacterium wasabiae WPP163, complete genomeintegrase family protein3e-28126
NC_014366:478000:4853014853014868841584Gamma proteobacterium HdN1, complete genomePhage integrase, probable truncated7e-28125
NC_005773:4899252:4902917490291749045151599Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family2e-27124
NC_011283:4438500:4461238446123844625091272Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-26121
NC_010571:2943369:2951780295178029533271548Opitutus terrae PB90-1, complete genomeintegrase family protein5e-26119
NC_004578:5192110:5196863519686351984581596Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family4e-25116
NC_002655:3538656:3563184356318435645091326Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-24113
NC_002695:3468873:3495897349589734972101314Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-24113
NC_011353:3573641:3600133360013336014461314Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesite-specific recombinase, phage integrase family protein3e-24113
NC_013008:3525428:3554858355485835561711314Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-24113
NC_013941:3300000:3333629333362933349541326Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeSite-specific recombinase, phage integrase family protein5e-24112
NC_006350:595893:6359436359436374361494Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein1e-22108
NC_004603:3080614:3097104309710430987081605Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein1e-1688.2
NC_008740:2563278:2579698257969825812061509Marinobacter aquaeolei VT8, complete genomephage integrase family protein1e-1481.6
NC_009792:3665369:3687591368759136887781188Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-1479.7
NC_020209:1949500:1956685195668519580401356Pseudomonas poae RE*1-1-14, complete genomesite-specific recombinase, phage integrase family protein2e-1377.4
NC_016514:3573400:3596820359682035981451326Enterobacter cloacae EcWSU1 chromosome, complete genomeintegrase family protein2e-1377.4
NC_014752:834616:844413844413844949537Neisseria lactamica ST-640, complete genomehypothetical protein7e-1272.8
NC_012880:3421500:3436962343696234383171356Dickeya dadantii Ech703, complete genomeintegrase family protein2e-0861.2