Pre_GI: BLASTP Hits

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Query: NC_010322:5349000:5380099 Pseudomonas putida GB-1 chromosome, complete genome

Start: 5380099, End: 5381367, Length: 1269

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007086:2887875:2953905295390529551911287Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein3e-107389
NC_020181:5130513:5150006515000651512711266Enterobacter aerogenes EA1509E, complete genomeFIG014574: hypothetical protein2e-67256
NC_008061:190287:2134892134892147751287Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein4e-67255
NC_011283:1178500:1192263119226311935281266Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-66253
NC_007973:2348481:2368681236868123699401260Ralstonia metallidurans CH34 chromosome 1, complete sequencehypothetical protein3e-63242
NC_010515:2111691:2137989213798921390981110Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencehypothetical protein3e-63242
NC_004431:4270305:4297605429760542989241320Escherichia coli CFT073, complete genomehypothetical protein1e-57223
NC_013716:5201097:5261318526131852626371320Citrobacter rodentium ICC168, complete genomeputative DNA binding protein4e-57222
NC_008563:4739333:4750065475006547513841320Escherichia coli APEC O1, complete genomehypothetical protein4e-57222
NC_011742:4655373:4664727466472746660461320Escherichia coli S88 chromosome, complete genomehypothetical protein4e-57222
NC_008347:2515921:2520988252098825223071320Maricaulis maris MCS10, complete genomehypothetical protein1e-56220
NC_010510:409469:4120104120104133171308Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completehypothetical protein9e-54211
NC_009792:3245368:3267710326771032690501341Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-52206
NC_011662:1017933:1029596102959610309631368Thauera sp. MZ1T, complete genomehypothetical protein1e-48194
NC_015410:3093465:3133289313328931346561368Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein3e-44179
NC_010162:8528116:8539094853909485404011308Sorangium cellulosum 'So ce 56', complete genomehypothetical protein1e-42174
NC_014217:2020737:2025824202582420272091386Starkeya novella DSM 506 chromosome, complete genomehypothetical protein6e-40165
NC_011985:3282924:3285642328564232869071266Agrobacterium radiobacter K84 chromosome 1, complete genomehypothetical protein9e-40164
NC_013194:1040197:1046486104648610478621377Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein4e-38159
NC_006582:4256915:4265425426542542667171293Bacillus clausii KSM-K16, complete genomehypothetical protein2e-35150
NC_009338:3029507:3043968304396830453321365Mycobacterium gilvum PYR-GCK chromosome, complete genomehypothetical protein1e-34147
NC_010337:98974:1081891081891095501362Heliobacterium modesticaldum Ice1, complete genomehypothetical protein4e-30132
NC_008611:3579500:3585781358578135870431263Mycobacterium ulcerans Agy99, complete genomehypothetical protein2e-21104
NC_020133:2421965:2436242243624224375041263Mycobacterium liflandii 128FXT, complete genomehypothetical protein2e-21103
NC_011891:1225000:1240009124000912413521344Anaeromyxobacter dehalogenans 2CP-1, complete genomePP-loop superfamily ATPase-like protein2e-20100
NC_020210:788639:8003688003688015671200Geobacillus sp. GHH01, complete genomehypothetical protein4e-1479.3
NC_007948:1972290:1994726199472619961261401Polaromonas sp. JS666, complete genomehypothetical protein1e-1378.2
NC_015381:1623587:1631205163120516326081404Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-1066.6
NC_013890:191616:2110892110892130051917Dehalococcoides sp. GT chromosome, complete genomehypothetical protein2e-0963.5