Pre_GI: BLASTP Hits

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Query: NC_010322:5349000:5365947 Pseudomonas putida GB-1 chromosome, complete genome

Start: 5365947, End: 5366450, Length: 504

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:5632591:5657225565722556585051281Pseudomonas putida F1, complete genomeDNA-directed DNA polymerase4e-38157
NC_007005:1605000:1612927161292716142071281Pseudomonas syringae pv. syringae B728a, complete genomeDNA-directed DNA polymerase8e-31132
NC_004129:2234851:2244215224421522454951281Pseudomonas fluorescens Pf-5, complete genomeultraviolet light resistance protein B, interruption-C4e-30130
NC_007275:1:2175217534581284Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completeRulB protein3e-29127
NC_016830:4999946:5011546501154650128231278Pseudomonas fluorescens F113 chromosome, complete genomeprotein UmuC6e-29126
NC_005773:866157:9245179245179255331017Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRulB5e-29126
NC_016830:3869572:3877640387764038789171278Pseudomonas fluorescens F113 chromosome, complete genomeprotein UmuC1e-28125
NC_004129:5373886:5421354542135454226251272Pseudomonas fluorescens Pf-5, complete genomeultraviolet light resistance protein B, interruption-C7e-27119
NC_012660:3689223:370123337012333701637405Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein2e-26118
NC_015740:2998500:2999374299937430005281155Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeimpB/mucB/samB family protein1e-25115
NC_009434:3611738:3625281362528136262911011Pseudomonas stutzeri A1501, complete genomeimpB/mucB/samB family protein1e-25115
NC_017986:4790482:482496648249664825310345Pseudomonas putida ND6 chromosome, complete genomeDNA-directed DNA polymerase4e-25113
NC_015410:2351464:2380712238071223819711260Pseudomonas mendocina NK-01 chromosome, complete genomeultraviolet light resistance protein B4e-1477
NC_009656:44500:9539895398964801083Pseudomonas aeruginosa PA7 chromosome, complete genomeultraviolet light resistance protein B2e-1375.1
NC_007005:1705406:172438317243831724826444Pseudomonas syringae pv. syringae B728a, complete genome3e-1374.3
NC_015222:2475792:2495405249540524967001296Nitrosomonas sp. AL212 chromosome, complete genomeDNA-directed DNA polymerase9e-1269.7
NC_015731:2400526:2420024242002424211001077Nitrosomonas sp. Is79A3 chromosome, complete genome9e-1062.8
NC_015731:2460248:2458963245896324602551293Nitrosomonas sp. Is79A3 chromosome, complete genomeUMUC domain-containing protein DNA-repair protein2e-0961.2
NC_014532:3596097:3628379362837936296561278Halomonas elongata DSM 2581, complete genomeDNA-directed DNA polymerase9e-0959.7
NC_007963:1552761:1564357156435715656371281Chromohalobacter salexigens DSM 3043, complete genomeDNA-directed DNA polymerase1e-0859.3
NC_020541:1786500:1806286180628618075751290Rhodanobacter sp. 2APBS1, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair8e-0649.7